Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is S_Angiogenesis-PT-15, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r081-csrt-149441064100126
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-0
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-1
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-15
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-2
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-3
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-4
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-5
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-6
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-7
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-8
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1494883906706

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --memory=6

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.358sec

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 4.627sec


RS generation: 14m21.364sec


-> reachability set: #nodes 642778 (6.4e+05) #states 1,115,538,966,669,107 (15)



starting MCC model checker
--------------------------

checking: EF [IS_FIREABLE [k25]]
normalized: E [true U IS_FIREABLE [k25]]

MC time: 2m51.437sec

checking: EF [IS_FIREABLE [k49]]
normalized: E [true U IS_FIREABLE [k49]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-15-ReachabilityFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m28.209sec

checking: EF [IS_FIREABLE [k7]]
normalized: E [true U IS_FIREABLE [k7]]

MC time: 2m41.083sec

checking: EF [IS_FIREABLE [k13]]
normalized: E [true U IS_FIREABLE [k13]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-15-ReachabilityFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m27.570sec

checking: EF [[IS_FIREABLE [k46] & IS_FIREABLE [k54]]]
normalized: E [true U [IS_FIREABLE [k46] & IS_FIREABLE [k54]]]

MC time: 2m31.253sec

checking: AG [~ [~ [~ [[IS_FIREABLE [k5] & IS_FIREABLE [k36]]]]]]
normalized: ~ [E [true U [IS_FIREABLE [k5] & IS_FIREABLE [k36]]]]

MC time: 2m20.293sec

checking: EF [~ [[IS_FIREABLE [k42] | ~ [~ [IS_FIREABLE [k56]]]]]]
normalized: E [true U ~ [[IS_FIREABLE [k42] | IS_FIREABLE [k56]]]]

MC time: 2m10.073sec

checking: AG [~ [[~ [[IS_FIREABLE [k28] | IS_FIREABLE [k17]]] & IS_FIREABLE [k51]]]]
normalized: ~ [E [true U [IS_FIREABLE [k51] & ~ [[IS_FIREABLE [k28] | IS_FIREABLE [k17]]]]]]

MC time: 2m 1.206sec

checking: AG [~ [[~ [~ [IS_FIREABLE [k50]]] & [IS_FIREABLE [k28] & [IS_FIREABLE [k19] | IS_FIREABLE [k17]]]]]]
normalized: ~ [E [true U [IS_FIREABLE [k50] & [IS_FIREABLE [k28] & [IS_FIREABLE [k19] | IS_FIREABLE [k17]]]]]]

MC time: 1m52.830sec

checking: EF [[IS_FIREABLE [k39] & [IS_FIREABLE [k51] | [[IS_FIREABLE [k18] & IS_FIREABLE [k26]] & ~ [IS_FIREABLE [k31]]]]]]
normalized: E [true U [IS_FIREABLE [k39] & [IS_FIREABLE [k51] | [~ [IS_FIREABLE [k31]] & [IS_FIREABLE [k18] & IS_FIREABLE [k26]]]]]]

MC time: 1m45.240sec

checking: AG [[~ [[[IS_FIREABLE [k61] & IS_FIREABLE [k43]] & ~ [IS_FIREABLE [k30]]]] & [~ [[IS_FIREABLE [k63] & IS_FIREABLE [k20]]] | IS_FIREABLE [k3]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [k3] | ~ [[IS_FIREABLE [k63] & IS_FIREABLE [k20]]]] & ~ [[~ [IS_FIREABLE [k30]] & [IS_FIREABLE [k61] & IS_FIREABLE [k43]]]]]]]]

MC time: 1m40.325sec

checking: AG [[[~ [IS_FIREABLE [k53]] | ~ [[IS_FIREABLE [k41] & IS_FIREABLE [k55]]]] | [~ [[IS_FIREABLE [k55] | IS_FIREABLE [k22]]] & ~ [~ [IS_FIREABLE [k38]]]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [k38] & ~ [[IS_FIREABLE [k55] | IS_FIREABLE [k22]]]] | [~ [[IS_FIREABLE [k41] & IS_FIREABLE [k55]]] | ~ [IS_FIREABLE [k53]]]]]]]

MC time: 1m29.153sec

checking: EF [[[IS_FIREABLE [k51] | [[IS_FIREABLE [k23] & IS_FIREABLE [k27]] & [IS_FIREABLE [k46] | IS_FIREABLE [k51]]]] & ~ [IS_FIREABLE [k63]]]]
normalized: E [true U [~ [IS_FIREABLE [k63]] & [IS_FIREABLE [k51] | [[IS_FIREABLE [k46] | IS_FIREABLE [k51]] & [IS_FIREABLE [k23] & IS_FIREABLE [k27]]]]]]

MC time: 1m23.005sec

checking: AG [~ [[[[IS_FIREABLE [k43] | IS_FIREABLE [k30]] & [IS_FIREABLE [k52] | IS_FIREABLE [k26]]] & [IS_FIREABLE [k56] & IS_FIREABLE [k9]]]]]
normalized: ~ [E [true U [[IS_FIREABLE [k56] & IS_FIREABLE [k9]] & [[IS_FIREABLE [k52] | IS_FIREABLE [k26]] & [IS_FIREABLE [k43] | IS_FIREABLE [k30]]]]]]

MC time: 1m17.919sec

checking: EF [[[~ [[IS_FIREABLE [k5] & IS_FIREABLE [t0]]] & [[IS_FIREABLE [k21] & IS_FIREABLE [k44]] & ~ [IS_FIREABLE [k34]]]] & ~ [[IS_FIREABLE [k16] | IS_FIREABLE [k37]]]]]
normalized: E [true U [~ [[IS_FIREABLE [k16] | IS_FIREABLE [k37]]] & [[~ [IS_FIREABLE [k34]] & [IS_FIREABLE [k21] & IS_FIREABLE [k44]]] & ~ [[IS_FIREABLE [k5] & IS_FIREABLE [t0]]]]]]


before gc: list nodes free: 1568957

after gc: idd nodes used:1492991, unused:62507009; list nodes free:542966385
MC time: 1m12.291sec

checking: EF [[[~ [[IS_FIREABLE [k29] & IS_FIREABLE [k54]]] & [[IS_FIREABLE [k11] | IS_FIREABLE [k41]] & [IS_FIREABLE [k14] & IS_FIREABLE [k57]]]] | IS_FIREABLE [k26]]]
normalized: E [true U [IS_FIREABLE [k26] | [[[IS_FIREABLE [k14] & IS_FIREABLE [k57]] & [IS_FIREABLE [k11] | IS_FIREABLE [k41]]] & ~ [[IS_FIREABLE [k29] & IS_FIREABLE [k54]]]]]]

MC time: 1m 7.389sec

checking: EF [IS_FIREABLE [k25]]
normalized: E [true U IS_FIREABLE [k25]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-15-ReachabilityFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 6m 3.631sec

checking: EF [IS_FIREABLE [k7]]
normalized: E [true U IS_FIREABLE [k7]]


BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok

ptnet_zbdd.cc:255: Boundedness exception: net is not 1-bounded!

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:20212 (315), effective:1561 (24)

initing FirstDep: 0m 0.001sec


sat_reach.icc:155: Timeout: after 170 sec


iterations count:1262 (19), effective:69 (1)

sat_reach.icc:155: Timeout: after 160 sec


iterations count:1248 (19), effective:68 (1)

sat_reach.icc:155: Timeout: after 150 sec


sat_reach.icc:155: Timeout: after 139 sec


sat_reach.icc:155: Timeout: after 129 sec


sat_reach.icc:155: Timeout: after 120 sec


sat_reach.icc:155: Timeout: after 111 sec


sat_reach.icc:155: Timeout: after 103 sec


sat_reach.icc:155: Timeout: after 95 sec


sat_reach.icc:155: Timeout: after 88 sec


sat_reach.icc:155: Timeout: after 82 sec


sat_reach.icc:155: Timeout: after 76 sec


sat_reach.icc:155: Timeout: after 70 sec


sat_reach.icc:155: Timeout: after 65 sec


iterations count:2161 (33), effective:129 (2)

iterations count:1922 (30), effective:111 (1)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-15"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-15.tgz
mv S_Angiogenesis-PT-15 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-15, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r081-csrt-149441064100126"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;