Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is S_Angiogenesis-PT-15, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r081-csrt-149441064100124
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1494883897986

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityCardinality.xml --memory=6

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.333sec

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 4.499sec


RS generation: 14m 5.690sec


-> reachability set: #nodes 642778 (6.4e+05) #states 1,115,538,966,669,107 (15)



starting MCC model checker
--------------------------

checking: AG [3<=KdStar]
normalized: ~ [E [true U ~ [3<=KdStar]]]

abstracting: (3<=KdStar)
states: 263,319,169,542,034 (14)
-> the formula is FALSE

FORMULA Angiogenesis-PT-15-ReachabilityCardinality-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m13.385sec

checking: AG [~ [2<=AktP3]]
normalized: ~ [E [true U 2<=AktP3]]

abstracting: (2<=AktP3)
states: 263,809,213,022,605 (14)
MC time: 2m59.916sec

checking: AG [PtP3<=P3k]
normalized: ~ [E [true U ~ [PtP3<=P3k]]]

abstracting: (PtP3<=P3k)
states: 1,114,921,349,899,972 (15)
MC time: 2m47.044sec

checking: AG [KdStarGStarPgStar<=P3k]
normalized: ~ [E [true U ~ [KdStarGStarPgStar<=P3k]]]

abstracting: (KdStarGStarPgStar<=P3k)
states: 1,115,538,966,669,107 (15)
-> the formula is TRUE

FORMULA Angiogenesis-PT-15-ReachabilityCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.142sec

checking: AG [PtP3P2<=KdStarGStarP3kStarP2]
normalized: ~ [E [true U ~ [PtP3P2<=KdStarGStarP3kStarP2]]]

abstracting: (PtP3P2<=KdStarGStarP3kStarP2)
states: 881,307,467,486,494 (14)
MC time: 2m47.593sec

checking: AG [~ [[3<=Pip3 | ~ [GStarP3kP3<=GP3]]]]
normalized: ~ [E [true U [3<=Pip3 | ~ [GStarP3kP3<=GP3]]]]

abstracting: (GStarP3kP3<=GP3)
states: 775,794,377,572,202 (14)
abstracting: (3<=Pip3)
states: 148,187,805,962,317 (14)
MC time: 2m35.445sec

checking: AG [[3<=Gab1 & ~ [~ [KdStarGStarP3<=PtP3P2]]]]
normalized: ~ [E [true U ~ [[3<=Gab1 & KdStarGStarP3<=PtP3P2]]]]

abstracting: (KdStarGStarP3<=PtP3P2)
states: 855,043,034,487,912 (14)
abstracting: (3<=Gab1)
states: 454,428,548,251,664 (14)
MC time: 2m24.348sec

checking: AG [~ [~ [[1<=KdStarGStarP3kStarP2 | GStarP3<=PtP3P2]]]]
normalized: ~ [E [true U ~ [[1<=KdStarGStarP3kStarP2 | GStarP3<=PtP3P2]]]]

abstracting: (GStarP3<=PtP3P2)
states: 721,301,604,310,510 (14)
abstracting: (1<=KdStarGStarP3kStarP2)
states: 325,803,854,787,689 (14)
MC time: 2m13.076sec

checking: AG [~ [[GStarP3<=DAGE & ~ [KdStarGStarPgStarP2<=KdStarGStarPgStarP2]]]]
normalized: ~ [E [true U [GStarP3<=DAGE & ~ [KdStarGStarPgStarP2<=KdStarGStarPgStarP2]]]]

abstracting: (KdStarGStarPgStarP2<=KdStarGStarPgStarP2)
states: 1,115,538,966,669,107 (15)
abstracting: (GStarP3<=DAGE)
states: 825,712,464,832,458 (14)
-> the formula is TRUE

FORMULA Angiogenesis-PT-15-ReachabilityCardinality-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 3.763sec

checking: EF [~ [[[KdStarGStarPg<=Pip2 | 1<=KdStarGP3] | [Gab1<=KdStarGStarPgP3 & 2<=DAG]]]]
normalized: E [true U ~ [[[Gab1<=KdStarGStarPgP3 & 2<=DAG] | [KdStarGStarPg<=Pip2 | 1<=KdStarGP3]]]]

abstracting: (1<=KdStarGP3)
states: 325,796,245,451,146 (14)
abstracting: (KdStarGStarPg<=Pip2)
states: 730,268,011,184,509 (14)
abstracting: (2<=DAG)
states: 303,984,397,443,751 (14)
abstracting: (Gab1<=KdStarGStarPgP3)
states: 322,486,918,439,637 (14)

BK_STOP 1494885913698

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok

ptnet_zbdd.cc:255: Boundedness exception: net is not 1-bounded!

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:20212 (315), effective:1561 (24)

initing FirstDep: 0m 0.000sec


iterations count:419 (6), effective:65 (1)

sat_reach.icc:155: Timeout: after 178 sec


sat_reach.icc:155: Timeout: after 166 sec


sat_reach.icc:155: Timeout: after 166 sec


sat_reach.icc:155: Timeout: after 154 sec


sat_reach.icc:155: Timeout: after 142 sec


sat_reach.icc:155: Timeout: after 132 sec


sat_reach.icc:155: Timeout: after 132 sec

/home/mcc/BenchKit/BenchKit_head.sh: line 15: 312 Killed ${MARCIE} --net-file=model.pnml --mcc-file=${BK_EXAMINATION}.xml ${MARCIE_CONFIG}

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-15"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-15.tgz
mv S_Angiogenesis-PT-15 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-15, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r081-csrt-149441064100124"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;