Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...........
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is S_Angiogenesis-PT-15, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r081-csrt-149441064100121
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-0
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-1
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-15
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-2
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-3
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-4
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-5
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-6
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-7
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-8
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1494883889100

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --memory=6

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.295sec

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 4.218sec


RS generation: 13m57.276sec


-> reachability set: #nodes 642778 (6.4e+05) #states 1,115,538,966,669,107 (15)



starting MCC model checker
--------------------------

checking: AG [EF [IS_FIREABLE [k15]]]
normalized: ~ [E [true U ~ [E [true U IS_FIREABLE [k15]]]]]

MC time: 2m53.374sec

checking: EX [EF [EG [IS_FIREABLE [k47]]]]
normalized: EX [E [true U EG [IS_FIREABLE [k47]]]]

..
EG iterations: 2
MC time: 2m42.045sec

checking: AG [~ [AG [~ [IS_FIREABLE [k12]]]]]
normalized: ~ [E [true U ~ [E [true U IS_FIREABLE [k12]]]]]

MC time: 2m32.053sec

checking: EF [AX [AG [IS_FIREABLE [k55]]]]
normalized: E [true U ~ [EX [E [true U ~ [IS_FIREABLE [k55]]]]]]

.MC time: 2m22.292sec

checking: EF [IS_FIREABLE [k46]]
normalized: E [true U IS_FIREABLE [k46]]

MC time: 2m13.435sec

checking: ~ [E [~ [IS_FIREABLE [k52]] U EF [IS_FIREABLE [k45]]]]
normalized: ~ [E [~ [IS_FIREABLE [k52]] U E [true U IS_FIREABLE [k45]]]]

MC time: 2m 5.019sec

checking: EF [[AG [~ [IS_FIREABLE [t1]]] & IS_FIREABLE [k36]]]
normalized: E [true U [IS_FIREABLE [k36] & ~ [E [true U IS_FIREABLE [t1]]]]]

MC time: 1m57.020sec

checking: [EF [E [IS_FIREABLE [k59] U IS_FIREABLE [k27]]] & EX [~ [EX [IS_FIREABLE [k13]]]]]
normalized: [EX [~ [EX [IS_FIREABLE [k13]]]] & E [true U E [IS_FIREABLE [k59] U IS_FIREABLE [k27]]]]

MC time: 1m50.379sec

checking: [[AG [EF [IS_FIREABLE [k29]]] & ~ [IS_FIREABLE [k14]]] & [IS_FIREABLE [k11] | ~ [IS_FIREABLE [k38]]]]
normalized: [[IS_FIREABLE [k11] | ~ [IS_FIREABLE [k38]]] & [~ [IS_FIREABLE [k14]] & ~ [E [true U ~ [E [true U IS_FIREABLE [k29]]]]]]]

MC time: 1m43.036sec

checking: ~ [[IS_FIREABLE [k52] | AG [[[IS_FIREABLE [k4] & IS_FIREABLE [k52]] | ~ [IS_FIREABLE [k44]]]]]]
normalized: ~ [[IS_FIREABLE [k52] | ~ [E [true U ~ [[~ [IS_FIREABLE [k44]] | [IS_FIREABLE [k4] & IS_FIREABLE [k52]]]]]]]]

MC time: 1m37.430sec

checking: EF [[[[IS_FIREABLE [k27] & [IS_FIREABLE [k59] | IS_FIREABLE [k36]]] & ~ [~ [IS_FIREABLE [k14]]]] & EX [IS_FIREABLE [k29]]]]
normalized: E [true U [EX [IS_FIREABLE [k29]] & [IS_FIREABLE [k14] & [IS_FIREABLE [k27] & [IS_FIREABLE [k59] | IS_FIREABLE [k36]]]]]]

.MC time: 1m30.177sec

checking: [AG [AG [~ [IS_FIREABLE [k46]]]] | EF [[[~ [IS_FIREABLE [k30]] & [IS_FIREABLE [k15] & IS_FIREABLE [k17]]] & ~ [IS_FIREABLE [k16]]]]]
normalized: [E [true U [~ [IS_FIREABLE [k16]] & [[IS_FIREABLE [k15] & IS_FIREABLE [k17]] & ~ [IS_FIREABLE [k30]]]]] | ~ [E [true U E [true U IS_FIREABLE [k46]]]]]

MC time: 1m25.046sec

checking: [~ [AG [EF [IS_FIREABLE [k14]]]] & [~ [IS_FIREABLE [k38]] | [EX [~ [IS_FIREABLE [k53]]] & [[IS_FIREABLE [t1] & IS_FIREABLE [k15]] & ~ [[IS_FIREABLE [k46] | IS_FIREABLE [k4]]]]]]]
normalized: [[[[~ [[IS_FIREABLE [k46] | IS_FIREABLE [k4]]] & [IS_FIREABLE [t1] & IS_FIREABLE [k15]]] & EX [~ [IS_FIREABLE [k53]]]] | ~ [IS_FIREABLE [k38]]] & E [true U ~ [E [true U IS_FIREABLE [k14]]]]]

MC time: 1m19.013sec

checking: [[EF [[[IS_FIREABLE [k51] & IS_FIREABLE [k14]] | IS_FIREABLE [k14]]] | [IS_FIREABLE [k27] | E [IS_FIREABLE [k11] U IS_FIREABLE [k60]]]] & EF [IS_FIREABLE [k19]]]
normalized: [E [true U IS_FIREABLE [k19]] & [[IS_FIREABLE [k27] | E [IS_FIREABLE [k11] U IS_FIREABLE [k60]]] | E [true U [IS_FIREABLE [k14] | [IS_FIREABLE [k51] & IS_FIREABLE [k14]]]]]]

MC time: 1m15.475sec

checking: [AF [[EF [IS_FIREABLE [k31]] & [[IS_FIREABLE [k38] | IS_FIREABLE [k44]] | ~ [IS_FIREABLE [k39]]]]] & E [[~ [IS_FIREABLE [k5]] | ~ [IS_FIREABLE [k45]]] U ~ [~ [IS_FIREABLE [k59]]]]]
normalized: [E [[~ [IS_FIREABLE [k45]] | ~ [IS_FIREABLE [k5]]] U IS_FIREABLE [k59]] & ~ [EG [~ [[[~ [IS_FIREABLE [k39]] | [IS_FIREABLE [k38] | IS_FIREABLE [k44]]] & E [true U IS_FIREABLE [k31]]]]]]]

MC time: 1m12.514sec

checking: [[IS_FIREABLE [k18] | [[[[IS_FIREABLE [k62] & IS_FIREABLE [k43]] & [IS_FIREABLE [k22] | IS_FIREABLE [k23]]] & AF [IS_FIREABLE [k63]]] | AG [~ [IS_FIREABLE [k8]]]]] | [~ [[~ [IS_FIREABLE [k37]] | IS_FIREABLE [k56]]] | [AF [IS_FIREABLE [k40]] & AX [[IS_FIREABLE [k20] & IS_FIREABLE [k57]]]]]]
normalized: [[[~ [EX [~ [[IS_FIREABLE [k20] & IS_FIREABLE [k57]]]]] & ~ [EG [~ [IS_FIREABLE [k40]]]]] | ~ [[IS_FIREABLE [k56] | ~ [IS_FIREABLE [k37]]]]] | [IS_FIREABLE [k18] | [~ [E [true U IS_FIREABLE [k8]]] | [~ [EG [~ [IS_FIREABLE [k63]]]] & [[IS_FIREABLE [k22] | IS_FIREABLE [k23]] & [IS_FIREABLE [k62] & IS_FIREABLE [k43]]]]]]]

..
EG iterations: 2
MC time: 1m 5.099sec

checking: AG [EF [IS_FIREABLE [k15]]]
normalized: ~ [E [true U ~ [E [true U IS_FIREABLE [k15]]]]]


BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok

ptnet_zbdd.cc:255: Boundedness exception: net is not 1-bounded!

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:20212 (315), effective:1561 (24)

initing FirstDep: 0m 0.000sec


sat_reach.icc:155: Timeout: after 172 sec


sat_reach.icc:155: Timeout: after 161 sec


iterations count:1249 (19), effective:68 (1)

sat_reach.icc:155: Timeout: after 151 sec


iterations count:244 (3), effective:15 (0)

sat_reach.icc:155: Timeout: after 141 sec


sat_reach.icc:155: Timeout: after 132 sec


sat_reach.icc:155: Timeout: after 124 sec


sat_reach.icc:155: Timeout: after 116 sec


sat_reach.icc:155: Timeout: after 109 sec


sat_reach.icc:155: Timeout: after 102 sec


sat_reach.icc:155: Timeout: after 96 sec


sat_reach.icc:155: Timeout: after 89 sec


sat_reach.icc:155: Timeout: after 84 sec


sat_reach.icc:155: Timeout: after 78 sec


sat_reach.icc:155: Timeout: after 74 sec


sat_reach.icc:155: Timeout: after 69 sec


sat_reach.icc:155: Timeout: after 64 sec


iterations count:1253 (19), effective:70 (1)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-15"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-15.tgz
mv S_Angiogenesis-PT-15 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-15, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r081-csrt-149441064100121"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;