Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is S_Angiogenesis-PT-15, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r081-csrt-149441064100120
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-0
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-1
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-15
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-2
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-3
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-4
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-5
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-6
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-7
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-8
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-9

=== Now, execution of the tool begins

BK_START 1494883881543

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLCardinality.xml --memory=6

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.361sec

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 4.250sec


RS generation: 13m59.343sec


-> reachability set: #nodes 642778 (6.4e+05) #states 1,115,538,966,669,107 (15)



starting MCC model checker
--------------------------

checking: AG [~ [1<=GStarPgP3]]
normalized: ~ [E [true U 1<=GStarPgP3]]

abstracting: (1<=GStarPgP3)
states: 474,934,552,498,597 (14)
-> the formula is FALSE

FORMULA Angiogenesis-PT-15-CTLCardinality-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m15.734sec

checking: AG [EF [KdStarGStarP3kStarP2<=KdStarGStarPgStar]]
normalized: ~ [E [true U ~ [E [true U KdStarGStarP3kStarP2<=KdStarGStarPgStar]]]]

abstracting: (KdStarGStarP3kStarP2<=KdStarGStarPgStar)
states: 932,928,814,008,164 (14)
-> the formula is TRUE

FORMULA Angiogenesis-PT-15-CTLCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.826sec

checking: EF [[2<=KdStarGStarPgStarP3 & 2<=KdStarGStarP3kP3]]
normalized: E [true U [2<=KdStarGStarPgStarP3 & 2<=KdStarGStarP3kP3]]

abstracting: (2<=KdStarGStarP3kP3)
states: 89,686,404,510,567 (13)
abstracting: (2<=KdStarGStarPgStarP3)
states: 89,305,342,105,399 (13)
MC time: 3m 7.012sec

checking: ~ [E [~ [2<=KdStarGStarPgStarP3] U ~ [2<=Gab1]]]
normalized: ~ [E [~ [2<=KdStarGStarPgStarP3] U ~ [2<=Gab1]]]

abstracting: (2<=Gab1)
states: 655,245,987,804,592 (14)
abstracting: (2<=KdStarGStarPgStarP3)
states: 89,305,342,105,399 (13)
MC time: 2m54.784sec

checking: ~ [EG [EF [Enz<=GStarP3kP3]]]
normalized: ~ [EG [E [true U Enz<=GStarP3kP3]]]

abstracting: (Enz<=GStarP3kP3)
states: 47,057,904 (7)
MC time: 2m41.043sec

checking: [EF [1<=GStarP3kP3] & AX [KdStarGStarP3kStarP2<=GStarP3kP3]]
normalized: [~ [EX [~ [KdStarGStarP3kStarP2<=GStarP3kP3]]] & E [true U 1<=GStarP3kP3]]

abstracting: (1<=GStarP3kP3)
states: 477,590,096,601,927 (14)
MC time: 2m30.218sec

checking: [AG [3<=Gab1] | ~ [EX [KdStarGStarP3kStar<=KdStarGP3]]]
normalized: [~ [EX [KdStarGStarP3kStar<=KdStarGP3]] | ~ [E [true U ~ [3<=Gab1]]]]

abstracting: (3<=Gab1)
states: 454,428,548,251,664 (14)
MC time: 2m19.878sec

checking: [[AF [~ [2<=DAG]] | 2<=PtP2] & EF [~ [2<=Pg]]]
normalized: [E [true U ~ [2<=Pg]] & [2<=PtP2 | ~ [EG [2<=DAG]]]]

abstracting: (2<=DAG)
states: 303,984,397,443,751 (14)
..
EG iterations: 2
abstracting: (2<=PtP2)
states: 303,984,397,443,751 (14)
abstracting: (2<=Pg)
states: 1,094,247,212,272,006 (15)
MC time: 2m10.024sec

checking: EF [[AG [GP3<=Pip3] & EF [3<=KdStarPgStar]]]
normalized: E [true U [E [true U 3<=KdStarPgStar] & ~ [E [true U ~ [GP3<=Pip3]]]]]

abstracting: (GP3<=Pip3)
states: 825,718,186,858,758 (14)
MC time: 2m 3.775sec

checking: E [AX [2<=KdStar] U AX [Gab1<=GStarP3kP3]]
normalized: E [~ [EX [~ [2<=KdStar]]] U ~ [EX [~ [Gab1<=GStarP3kP3]]]]

abstracting: (Gab1<=GStarP3kP3)
states: 383,055,284,946,320 (14)
.abstracting: (2<=KdStar)
states: 453,560,447,865,608 (14)
.
before gc: list nodes free: 562207

after gc: idd nodes used:6269624, unused:57730376; list nodes free:494580286
MC time: 1m51.144sec

checking: AX [E [KdStarPg<=P3k U Akt<=KdStarGStarPgStarP2]]
normalized: ~ [EX [~ [E [KdStarPg<=P3k U Akt<=KdStarGStarPgStarP2]]]]

abstracting: (Akt<=KdStarGStarPgStarP2)
states: 104,061,489,313,974 (14)
abstracting: (KdStarPg<=P3k)
states: 1,114,968,318,555,833 (15)
MC time: 1m44.080sec

checking: [[AF [Pip3<=KdStarPgStarP2] & AG [3<=Pg]] & EX [[1<=KdStar & ~ [PtP2<=KdStarGStarP3kP3]]]]
normalized: [EX [[1<=KdStar & ~ [PtP2<=KdStarGStarP3kP3]]] & [~ [E [true U ~ [3<=Pg]]] & ~ [EG [~ [Pip3<=KdStarPgStarP2]]]]]

abstracting: (Pip3<=KdStarPgStarP2)
states: 640,210,512,679,505 (14)
MC time: 2m18.488sec

checking: E [[[KdStarPgStarP2<=Pten & DAGE<=Pg] | ~ [1<=KdStarPgStar]] U AG [1<=DAG]]
normalized: E [[~ [1<=KdStarPgStar] | [KdStarPgStarP2<=Pten & DAGE<=Pg]] U ~ [E [true U ~ [1<=DAG]]]]

abstracting: (1<=DAG)
states: 594,887,115,795,254 (14)

BK_STOP 1494886460445

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok

ptnet_zbdd.cc:255: Boundedness exception: net is not 1-bounded!

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:20212 (315), effective:1561 (24)

initing FirstDep: 0m 0.000sec


iterations count:1261 (19), effective:69 (1)

iterations count:259 (4), effective:15 (0)

sat_reach.icc:155: Timeout: after 186 sec


sat_reach.icc:155: Timeout: after 173 sec


sat_reach.icc:155: Timeout: after 160 sec


sat_reach.icc:155: Timeout: after 149 sec


sat_reach.icc:155: Timeout: after 138 sec


sat_reach.icc:155: Timeout: after 128 sec


sat_reach.icc:155: Timeout: after 119 sec


sat_reach.icc:155: Timeout: after 110 sec


sat_reach.icc:155: Timeout: after 102 sec


net_ddint.h:596: Timeout: after 95 sec


iterations count:139 (2), effective:15 (0)
/home/mcc/BenchKit/BenchKit_head.sh: line 15: 315 Killed ${MARCIE} --net-file=model.pnml --mcc-file=${BK_EXAMINATION}.xml ${MARCIE_CONFIG}

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-15"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-15.tgz
mv S_Angiogenesis-PT-15 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-15, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r081-csrt-149441064100120"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;