Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is S_Angiogenesis-PT-01, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r081-csrt-149441064100117
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-0
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-1
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-15
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-2
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-3
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-4
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-5
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-6
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-7
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-8
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1494883873536

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --memory=6

parse successfull
net created successfully

Net: Angiogenesis_PT_01
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.354sec


RS generation: 0m 0.002sec


-> reachability set: #nodes 80 (8.0e+01) #states 110



starting MCC model checker
--------------------------

checking: EF [~ [~ [IS_FIREABLE [k19]]]]
normalized: E [true U IS_FIREABLE [k19]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: AG [IS_FIREABLE [k6]]
normalized: ~ [E [true U ~ [IS_FIREABLE [k6]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: AG [~ [IS_FIREABLE [k50]]]
normalized: ~ [E [true U IS_FIREABLE [k50]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: AG [~ [IS_FIREABLE [k24]]]
normalized: ~ [E [true U IS_FIREABLE [k24]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[~ [IS_FIREABLE [k44]] | IS_FIREABLE [k57]]]
normalized: E [true U [~ [IS_FIREABLE [k44]] | IS_FIREABLE [k57]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [~ [[IS_FIREABLE [k63] & ~ [IS_FIREABLE [k41]]]]]
normalized: ~ [E [true U [~ [IS_FIREABLE [k41]] & IS_FIREABLE [k63]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: EF [[IS_FIREABLE [k51] | ~ [IS_FIREABLE [k62]]]]
normalized: E [true U [IS_FIREABLE [k51] | ~ [IS_FIREABLE [k62]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [~ [~ [[[IS_FIREABLE [k27] & IS_FIREABLE [k48]] & IS_FIREABLE [k59]]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [k27] & IS_FIREABLE [k48]] & IS_FIREABLE [k59]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[~ [~ [IS_FIREABLE [k47]]] | [IS_FIREABLE [k5] & ~ [IS_FIREABLE [k48]]]]]
normalized: E [true U [IS_FIREABLE [k47] | [IS_FIREABLE [k5] & ~ [IS_FIREABLE [k48]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[~ [IS_FIREABLE [k43]] | [[~ [IS_FIREABLE [k62]] | ~ [IS_FIREABLE [k37]]] & ~ [IS_FIREABLE [k34]]]]]
normalized: ~ [E [true U ~ [[[~ [IS_FIREABLE [k34]] & [~ [IS_FIREABLE [k37]] | ~ [IS_FIREABLE [k62]]]] | ~ [IS_FIREABLE [k43]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [~ [[[[IS_FIREABLE [k3] | IS_FIREABLE [k23]] | ~ [IS_FIREABLE [k18]]] & IS_FIREABLE [k3]]]]
normalized: ~ [E [true U [IS_FIREABLE [k3] & [~ [IS_FIREABLE [k18]] | [IS_FIREABLE [k3] | IS_FIREABLE [k23]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[[[~ [IS_FIREABLE [k40]] & [IS_FIREABLE [t0] | IS_FIREABLE [k11]]] | IS_FIREABLE [k50]] & ~ [[[IS_FIREABLE [k28] | IS_FIREABLE [k58]] & [IS_FIREABLE [k54] | IS_FIREABLE [k58]]]]]]
normalized: ~ [E [true U ~ [[[[[IS_FIREABLE [t0] | IS_FIREABLE [k11]] & ~ [IS_FIREABLE [k40]]] | IS_FIREABLE [k50]] & ~ [[[IS_FIREABLE [k54] | IS_FIREABLE [k58]] & [IS_FIREABLE [k28] | IS_FIREABLE [k58]]]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[[[~ [IS_FIREABLE [k52]] & [IS_FIREABLE [k56] | IS_FIREABLE [k17]]] | [[IS_FIREABLE [k48] & IS_FIREABLE [k47]] | IS_FIREABLE [k27]]] | ~ [~ [[IS_FIREABLE [k7] | IS_FIREABLE [k45]]]]]]
normalized: E [true U [[IS_FIREABLE [k7] | IS_FIREABLE [k45]] | [[[IS_FIREABLE [k48] & IS_FIREABLE [k47]] | IS_FIREABLE [k27]] | [[IS_FIREABLE [k56] | IS_FIREABLE [k17]] & ~ [IS_FIREABLE [k52]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: EF [[[IS_FIREABLE [k34] | [~ [IS_FIREABLE [k56]] | ~ [IS_FIREABLE [k43]]]] | [[~ [IS_FIREABLE [k13]] & [IS_FIREABLE [k27] | IS_FIREABLE [k63]]] & [[IS_FIREABLE [k53] & IS_FIREABLE [k28]] | ~ [IS_FIREABLE [k43]]]]]]
normalized: E [true U [[[~ [IS_FIREABLE [k43]] | [IS_FIREABLE [k53] & IS_FIREABLE [k28]]] & [[IS_FIREABLE [k27] | IS_FIREABLE [k63]] & ~ [IS_FIREABLE [k13]]]] | [IS_FIREABLE [k34] | [~ [IS_FIREABLE [k43]] | ~ [IS_FIREABLE [k56]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[[[[IS_FIREABLE [k5] & IS_FIREABLE [k19]] & IS_FIREABLE [k35]] | [IS_FIREABLE [k37] & [IS_FIREABLE [k63] | IS_FIREABLE [k51]]]] | [IS_FIREABLE [k12] | ~ [[IS_FIREABLE [k30] & IS_FIREABLE [k34]]]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [k12] | ~ [[IS_FIREABLE [k30] & IS_FIREABLE [k34]]]] | [[IS_FIREABLE [k37] & [IS_FIREABLE [k63] | IS_FIREABLE [k51]]] | [IS_FIREABLE [k35] & [IS_FIREABLE [k5] & IS_FIREABLE [k19]]]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[[[[IS_FIREABLE [k54] & IS_FIREABLE [k37]] | [IS_FIREABLE [k23] | IS_FIREABLE [k33]]] | [[IS_FIREABLE [k28] | IS_FIREABLE [k41]] | ~ [IS_FIREABLE [k3]]]] | [[IS_FIREABLE [k36] & IS_FIREABLE [k42]] & [IS_FIREABLE [k43] & ~ [IS_FIREABLE [k58]]]]]]
normalized: ~ [E [true U ~ [[[[IS_FIREABLE [k43] & ~ [IS_FIREABLE [k58]]] & [IS_FIREABLE [k36] & IS_FIREABLE [k42]]] | [[~ [IS_FIREABLE [k3]] | [IS_FIREABLE [k28] | IS_FIREABLE [k41]]] | [[IS_FIREABLE [k23] | IS_FIREABLE [k33]] | [IS_FIREABLE [k54] & IS_FIREABLE [k37]]]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

totally nodes used: 9665(9.7e+03)
number of garbage collections: 0
fire ops cache: hits/miss/sum: 14326 22644 36970
used/not used/entry size/cache size: 20000 67088864 16 1024MB
basic ops cache: hits/miss/sum: 11698 25080 36778
used/not used/entry size/cache size: 48340 16728876 12 192MB
unary ops cache: hits/miss/sum: 0 28 28
used/not used/entry size/cache size: 28 8388580 8 64MB
abstract ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 12 96MB
state nr cache: hits/miss/sum: 42 80 122
used/not used/entry size/cache size: 80 2097072 32 64MB
max state cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 32 256MB
uniqueHash elements/entry size/size: 67108864 4 256MB
0 67099200
1 9663
2 1
3 0
4 0
5 0
6 0
7 0
8 0
9 0
>= 10 0

Total processing time: 0m 2.099sec


BK_STOP 1494883875669

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:833 (13), effective:55 (0)

initing FirstDep: 0m 0.000sec


iterations count:558 (8), effective:31 (0)

iterations count:64 (1), effective:0 (0)

iterations count:617 (9), effective:36 (0)

iterations count:616 (9), effective:36 (0)

iterations count:85 (1), effective:1 (0)

iterations count:487 (7), effective:28 (0)

iterations count:86 (1), effective:1 (0)

iterations count:64 (1), effective:0 (0)

iterations count:88 (1), effective:3 (0)

iterations count:341 (5), effective:20 (0)

iterations count:64 (1), effective:0 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-01"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-01.tgz
mv S_Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-01, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r081-csrt-149441064100117"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;