Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is S_Angiogenesis-PT-01, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r081-csrt-149441064100115
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1494883865673

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityCardinality.xml --memory=6

parse successfull
net created successfully

Net: Angiogenesis_PT_01
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.406sec


RS generation: 0m 0.002sec


-> reachability set: #nodes 80 (8.0e+01) #states 110



starting MCC model checker
--------------------------

checking: EF [~ [~ [~ [2<=PtP3]]]]
normalized: E [true U ~ [2<=PtP3]]

abstracting: (2<=PtP3)
states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: EF [3<=DAG]
normalized: E [true U 3<=DAG]

abstracting: (3<=DAG)
states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [KdStarGStarPgStarP2<=KdStarGStarP3kStarP3P2]
normalized: E [true U KdStarGStarPgStarP2<=KdStarGStarP3kStarP3P2]

abstracting: (KdStarGStarPgStarP2<=KdStarGStarP3kStarP3P2)
states: 108
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [Gab1<=GStarPgP3]
normalized: E [true U Gab1<=GStarPgP3]

abstracting: (Gab1<=GStarPgP3)
states: 97
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: AG [~ [~ [[2<=KdStarGStarPgStarP2 & 3<=Pten]]]]
normalized: ~ [E [true U ~ [[2<=KdStarGStarPgStarP2 & 3<=Pten]]]]

abstracting: (3<=Pten)
states: 0
abstracting: (2<=KdStarGStarPgStarP2)
states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [KdStarGStarPgStarP2<=KdStarGStarPg]
normalized: E [true U KdStarGStarPgStarP2<=KdStarGStarPg]

abstracting: (KdStarGStarPgStarP2<=KdStarGStarPg)
states: 108
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [KdStarGStarPgStarP3P2<=Pg]
normalized: E [true U KdStarGStarPgStarP3P2<=Pg]

abstracting: (KdStarGStarPgStarP3P2<=Pg)
states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [KdStar<=KdStarGP3]
normalized: E [true U KdStar<=KdStarGP3]

abstracting: (KdStar<=KdStarGP3)
states: 100
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [~ [[3<=P3k | ~ [KdStarPgStarP2<=KdStarGStarP3kStar]]]]
normalized: ~ [E [true U [3<=P3k | ~ [KdStarPgStarP2<=KdStarGStarP3kStar]]]]

abstracting: (KdStarPgStarP2<=KdStarGStarP3kStar)
states: 109
abstracting: (3<=P3k)
states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[1<=KdStarGStarP3kStarP2 | [Pg<=KdStarGStarP3kP3 | ~ [3<=KdStarGStarPg]]]]
normalized: ~ [E [true U ~ [[1<=KdStarGStarP3kStarP2 | [Pg<=KdStarGStarP3kP3 | ~ [3<=KdStarGStarPg]]]]]]

abstracting: (3<=KdStarGStarPg)
states: 0
abstracting: (Pg<=KdStarGStarP3kP3)
states: 53
abstracting: (1<=KdStarGStarP3kStarP2)
states: 2
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [~ [[[3<=DAGE | 1<=Pten] & [1<=KdStarGP3 | 3<=KdStarGStarP3]]]]
normalized: ~ [E [true U [[1<=KdStarGP3 | 3<=KdStarGStarP3] & [3<=DAGE | 1<=Pten]]]]

abstracting: (1<=Pten)
states: 86
abstracting: (3<=DAGE)
states: 0
abstracting: (3<=KdStarGStarP3)
states: 0
abstracting: (1<=KdStarGP3)
states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[[~ [3<=Pip3] | [1<=P3k | 3<=KdStarGStarPgStarP2]] | ~ [2<=KdStarGStarP3kStarP2]]]
normalized: E [true U [~ [2<=KdStarGStarP3kStarP2] | [[1<=P3k | 3<=KdStarGStarPgStarP2] | ~ [3<=Pip3]]]]

abstracting: (3<=Pip3)
states: 0
abstracting: (3<=KdStarGStarPgStarP2)
states: 0
abstracting: (1<=P3k)
states: 72
abstracting: (2<=KdStarGStarP3kStarP2)
states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[[~ [KdStarPgStar<=KdStarGStarP3kStarP3] | [3<=KdStarGStarP3kStarP2 & 2<=KdStarGStarPgStarP2]] | [~ [2<=Enz] | 1<=KdStarGStarPgStar]]]
normalized: E [true U [[1<=KdStarGStarPgStar | ~ [2<=Enz]] | [[3<=KdStarGStarP3kStarP2 & 2<=KdStarGStarPgStarP2] | ~ [KdStarPgStar<=KdStarGStarP3kStarP3]]]]

abstracting: (KdStarPgStar<=KdStarGStarP3kStarP3)
states: 102
abstracting: (2<=KdStarGStarPgStarP2)
states: 0
abstracting: (3<=KdStarGStarP3kStarP2)
states: 0
abstracting: (2<=Enz)
states: 0
abstracting: (1<=KdStarGStarPgStar)
states: 13
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[[[3<=KdStarGP3 | 1<=Pg] | KdStarGStarP3kStarP3P2<=KdStarGP3] | ~ [~ [GP3<=KdStarGStarP3]]]]
normalized: ~ [E [true U ~ [[[[3<=KdStarGP3 | 1<=Pg] | KdStarGStarP3kStarP3P2<=KdStarGP3] | GP3<=KdStarGStarP3]]]]

abstracting: (GP3<=KdStarGStarP3)
states: 110
abstracting: (KdStarGStarP3kStarP3P2<=KdStarGP3)
states: 110
abstracting: (1<=Pg)
states: 59
abstracting: (3<=KdStarGP3)
states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[~ [[KdStarGStarPg<=Pip2 | KdStarG<=PtP3P2]] & [1<=KdStarGStar | ~ [KdStarPg<=KdStarGStarP3kStarP3P2]]]]
normalized: ~ [E [true U ~ [[[1<=KdStarGStar | ~ [KdStarPg<=KdStarGStarP3kStarP3P2]] & ~ [[KdStarGStarPg<=Pip2 | KdStarG<=PtP3P2]]]]]]

abstracting: (KdStarG<=PtP3P2)
states: 106
abstracting: (KdStarGStarPg<=Pip2)
states: 99
abstracting: (KdStarPg<=KdStarGStarP3kStarP3P2)
states: 102
abstracting: (1<=KdStarGStar)
states: 13
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[[1<=KdStarGStarPgStarP3 & [3<=PtP3P2 & 2<=PtP2]] | [PtP3<=KdStarGStar & [AktP3<=GStarPgP3 | AktP3<=KdStarPg]]]]
normalized: E [true U [[[AktP3<=GStarPgP3 | AktP3<=KdStarPg] & PtP3<=KdStarGStar] | [[3<=PtP3P2 & 2<=PtP2] & 1<=KdStarGStarPgStarP3]]]

abstracting: (1<=KdStarGStarPgStarP3)
states: 2
abstracting: (2<=PtP2)
states: 0
abstracting: (3<=PtP3P2)
states: 0
abstracting: (PtP3<=KdStarGStar)
states: 102
abstracting: (AktP3<=KdStarPg)
states: 105
abstracting: (AktP3<=GStarPgP3)
states: 105
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

totally nodes used: 6470(6.5e+03)
number of garbage collections: 0
fire ops cache: hits/miss/sum: 8330 15390 23720
used/not used/entry size/cache size: 13336 67095528 16 1024MB
basic ops cache: hits/miss/sum: 5841 13938 19779
used/not used/entry size/cache size: 26981 16750235 12 192MB
unary ops cache: hits/miss/sum: 0 28 28
used/not used/entry size/cache size: 28 8388580 8 64MB
abstract ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 12 96MB
state nr cache: hits/miss/sum: 322 415 737
used/not used/entry size/cache size: 415 2096737 32 64MB
max state cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 32 256MB
uniqueHash elements/entry size/size: 67108864 4 256MB
0 67102395
1 6468
2 1
3 0
4 0
5 0
6 0
7 0
8 0
9 0
>= 10 0

Total processing time: 0m 2.224sec


BK_STOP 1494883867929

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:833 (13), effective:55 (0)

initing FirstDep: 0m 0.000sec


iterations count:64 (1), effective:0 (0)

iterations count:74 (1), effective:1 (0)

iterations count:220 (3), effective:7 (0)

iterations count:64 (1), effective:0 (0)

iterations count:74 (1), effective:1 (0)

iterations count:64 (1), effective:0 (0)

iterations count:86 (1), effective:4 (0)

iterations count:166 (2), effective:7 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:114 (1), effective:4 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-01"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-01.tgz
mv S_Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-01, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r081-csrt-149441064100115"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;