Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is S_Angiogenesis-PT-01, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r081-csrt-149441064100112
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-0
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-1
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-15
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-2
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-3
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-4
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-5
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-6
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-7
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-8
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1494883856586

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --memory=6

parse successfull
net created successfully

Net: Angiogenesis_PT_01
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.341sec


RS generation: 0m 0.002sec


-> reachability set: #nodes 80 (8.0e+01) #states 110



starting MCC model checker
--------------------------

checking: EF [EF [EF [IS_FIREABLE [k29]]]]
normalized: E [true U E [true U E [true U IS_FIREABLE [k29]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: IS_FIREABLE [k25]
normalized: IS_FIREABLE [k25]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: IS_FIREABLE [k29]
normalized: IS_FIREABLE [k29]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EX [IS_FIREABLE [k58]]
normalized: EX [IS_FIREABLE [k58]]

.-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: IS_FIREABLE [k12]
normalized: IS_FIREABLE [k12]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [~ [AG [~ [IS_FIREABLE [k59]]]]]
normalized: E [true U E [true U IS_FIREABLE [k59]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: IS_FIREABLE [k57]
normalized: IS_FIREABLE [k57]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AF [EF [~ [[IS_FIREABLE [k56] | IS_FIREABLE [k50]]]]]
normalized: ~ [EG [~ [E [true U ~ [[IS_FIREABLE [k56] | IS_FIREABLE [k50]]]]]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: EG [A [IS_FIREABLE [k9] U IS_FIREABLE [k52]]]
normalized: EG [[~ [EG [~ [IS_FIREABLE [k52]]]] & ~ [E [~ [IS_FIREABLE [k52]] U [~ [IS_FIREABLE [k9]] & ~ [IS_FIREABLE [k52]]]]]]]

.
EG iterations: 1
..
EG iterations: 2
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: AF [E [IS_FIREABLE [k8] U ~ [IS_FIREABLE [k52]]]]
normalized: ~ [EG [~ [E [IS_FIREABLE [k8] U ~ [IS_FIREABLE [k52]]]]]]

..
EG iterations: 2
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: ~ [AG [[~ [IS_FIREABLE [k40]] & AG [IS_FIREABLE [k25]]]]]
normalized: E [true U ~ [[~ [E [true U ~ [IS_FIREABLE [k25]]]] & ~ [IS_FIREABLE [k40]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: ~ [EG [A [IS_FIREABLE [k38] U IS_FIREABLE [k30]]]]
normalized: ~ [EG [[~ [EG [~ [IS_FIREABLE [k30]]]] & ~ [E [~ [IS_FIREABLE [k30]] U [~ [IS_FIREABLE [k38]] & ~ [IS_FIREABLE [k30]]]]]]]]

.
EG iterations: 1
..
EG iterations: 2
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: ~ [E [[~ [IS_FIREABLE [k48]] | ~ [IS_FIREABLE [k4]]] U EX [IS_FIREABLE [k12]]]]
normalized: ~ [E [[~ [IS_FIREABLE [k4]] | ~ [IS_FIREABLE [k48]]] U EX [IS_FIREABLE [k12]]]]

.-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: [AX [AF [IS_FIREABLE [k9]]] | [~ [AF [[IS_FIREABLE [k16] | IS_FIREABLE [k26]]]] & [[EF [IS_FIREABLE [k47]] | IS_FIREABLE [k43]] | EF [IS_FIREABLE [k10]]]]]
normalized: [[EG [~ [[IS_FIREABLE [k16] | IS_FIREABLE [k26]]]] & [E [true U IS_FIREABLE [k10]] | [IS_FIREABLE [k43] | E [true U IS_FIREABLE [k47]]]]] | ~ [EX [EG [~ [IS_FIREABLE [k9]]]]]]

.
EG iterations: 1
..
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: [[EG [~ [IS_FIREABLE [k23]]] & [EF [[IS_FIREABLE [k32] & IS_FIREABLE [k35]]] | IS_FIREABLE [k23]]] | AX [[IS_FIREABLE [k46] | [[IS_FIREABLE [k19] & IS_FIREABLE [k27]] | IS_FIREABLE [k58]]]]]
normalized: [~ [EX [~ [[IS_FIREABLE [k46] | [IS_FIREABLE [k58] | [IS_FIREABLE [k19] & IS_FIREABLE [k27]]]]]]] | [[IS_FIREABLE [k23] | E [true U [IS_FIREABLE [k32] & IS_FIREABLE [k35]]]] & EG [~ [IS_FIREABLE [k23]]]]]

.
EG iterations: 1
.-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: [[IS_FIREABLE [k40] & A [~ [IS_FIREABLE [k57]] U [IS_FIREABLE [k10] & IS_FIREABLE [k27]]]] & [~ [~ [[[IS_FIREABLE [k16] & IS_FIREABLE [k63]] | IS_FIREABLE [t1]]]] | A [[IS_FIREABLE [k3] | IS_FIREABLE [t1]] U ~ [IS_FIREABLE [k30]]]]]
normalized: [[[IS_FIREABLE [t1] | [IS_FIREABLE [k16] & IS_FIREABLE [k63]]] | [~ [EG [IS_FIREABLE [k30]]] & ~ [E [IS_FIREABLE [k30] U [IS_FIREABLE [k30] & ~ [[IS_FIREABLE [k3] | IS_FIREABLE [t1]]]]]]]] & [[~ [EG [~ [[IS_FIREABLE [k10] & IS_FIREABLE [k27]]]]] & ~ [E [~ [[IS_FIREABLE [k10] & IS_FIREABLE [k27]]] U [~ [[IS_FIREABLE [k10] & IS_FIREABLE [k27]]] & IS_FIREABLE [k57]]]]] & IS_FIREABLE [k40]]]


EG iterations: 0
..
EG iterations: 2
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

totally nodes used: 14154(1.4e+04)
number of garbage collections: 0
fire ops cache: hits/miss/sum: 18953 30968 49921
used/not used/entry size/cache size: 27160 67081704 16 1024MB
basic ops cache: hits/miss/sum: 13538 34239 47777
used/not used/entry size/cache size: 68134 16709082 12 192MB
unary ops cache: hits/miss/sum: 0 28 28
used/not used/entry size/cache size: 28 8388580 8 64MB
abstract ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 12 96MB
state nr cache: hits/miss/sum: 42 80 122
used/not used/entry size/cache size: 80 2097072 32 64MB
max state cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 32 256MB
uniqueHash elements/entry size/size: 67108864 4 256MB
0 67094713
1 14148
2 3
3 0
4 0
5 0
6 0
7 0
8 0
9 0
>= 10 0

Total processing time: 0m 2.119sec


BK_STOP 1494883858741

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:833 (13), effective:55 (0)

initing FirstDep: 0m 0.000sec


iterations count:534 (8), effective:28 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:193 (3), effective:10 (0)

iterations count:68 (1), effective:1 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:77 (1), effective:1 (0)

iterations count:577 (9), effective:33 (0)

iterations count:620 (9), effective:36 (0)

iterations count:291 (4), effective:16 (0)

iterations count:64 (1), effective:0 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-01"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-01.tgz
mv S_Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-01, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r081-csrt-149441064100112"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;