Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is MAPK-PT-320, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r031-blw7-149440473900210
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-320-CTLCardinality-0
FORMULA_NAME MAPK-PT-320-CTLCardinality-1
FORMULA_NAME MAPK-PT-320-CTLCardinality-10
FORMULA_NAME MAPK-PT-320-CTLCardinality-11
FORMULA_NAME MAPK-PT-320-CTLCardinality-12
FORMULA_NAME MAPK-PT-320-CTLCardinality-13
FORMULA_NAME MAPK-PT-320-CTLCardinality-14
FORMULA_NAME MAPK-PT-320-CTLCardinality-15
FORMULA_NAME MAPK-PT-320-CTLCardinality-2
FORMULA_NAME MAPK-PT-320-CTLCardinality-3
FORMULA_NAME MAPK-PT-320-CTLCardinality-4
FORMULA_NAME MAPK-PT-320-CTLCardinality-5
FORMULA_NAME MAPK-PT-320-CTLCardinality-6
FORMULA_NAME MAPK-PT-320-CTLCardinality-7
FORMULA_NAME MAPK-PT-320-CTLCardinality-8
FORMULA_NAME MAPK-PT-320-CTLCardinality-9

=== Now, execution of the tool begins

BK_START 1494457210822

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLCardinality.xml --memory=6

parse successfull
net created successfully

Net: MAPK_PT_320
(NrP: 22 NrTr: 30 NrArc: 90)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.122sec

parse successfull
net created successfully

Net: MAPK_PT_320
(NrP: 22 NrTr: 30 NrArc: 90)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 3.541sec


RS generation: 1m36.705sec


-> reachability set: #nodes 174862 (1.7e+05) #states 2,616,258,717,809,759,012,724,668,961 (27)



starting MCC model checker
--------------------------

checking: EF [~ [AX [3<=Phase3]]]
normalized: E [true U EX [~ [3<=Phase3]]]

abstracting: (3<=Phase3)
states: 2,616,258,420,259,142,304,600,788,022 (27)
.MC time: 3m39.023sec

checking: AG [1<=Phase2]
normalized: ~ [E [true U ~ [1<=Phase2]]]

abstracting: (1<=Phase2)
states: 2,616,258,717,736,851,701,790,100,620 (27)
MC time: 3m25.608sec

checking: AG [EX [~ [2<=ERKPP_Phase3]]]
normalized: ~ [E [true U ~ [EX [~ [2<=ERKPP_Phase3]]]]]

abstracting: (2<=ERKPP_Phase3)
states: 2,519,069,569,497,730,949,212,417,140 (27)
.-> the formula is FALSE

FORMULA MAPK-PT-320-CTLCardinality-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m52.038sec

checking: AG [~ [~ [[1<=MEKPP_Phase2 | 1<=Raf]]]]
normalized: ~ [E [true U ~ [[1<=MEKPP_Phase2 | 1<=Raf]]]]

abstracting: (1<=Raf)
states: 2,596,256,063,000,577,050,319,007,380 (27)
abstracting: (1<=MEKPP_Phase2)
states: 2,504,963,304,519,551,467,254,390,600 (27)

FORMULA MAPK-PT-320-CTLCardinality-1 CANNOT_COMPUTE

MC time: 2m35.572sec

checking: EF [EF [~ [ERKP_Phase3<=ERKP_Phase3]]]
normalized: E [true U E [true U ~ [ERKP_Phase3<=ERKP_Phase3]]]

abstracting: (ERKP_Phase3<=ERKP_Phase3)
states: 2,616,258,717,809,759,012,724,668,961 (27)
-> the formula is FALSE

FORMULA MAPK-PT-320-CTLCardinality-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: AG [EF [~ [RasGTP<=ERKP_MEKPP]]]
normalized: ~ [E [true U ~ [E [true U ~ [RasGTP<=ERKP_MEKPP]]]]]

abstracting: (RasGTP<=ERKP_MEKPP)

FORMULA MAPK-PT-320-CTLCardinality-11 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: EF [AX [Raf<=MEKP]]
normalized: E [true U ~ [EX [~ [Raf<=MEKP]]]]

abstracting: (Raf<=MEKP)

FORMULA MAPK-PT-320-CTLCardinality-14 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: ~ [~ [EF [[2<=MEKP & Phase2<=RafP_Phase1]]]]
normalized: E [true U [2<=MEKP & Phase2<=RafP_Phase1]]

abstracting: (Phase2<=RafP_Phase1)

FORMULA MAPK-PT-320-CTLCardinality-10 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: EF [[EX [ERKPP_Phase3<=Phase1] & RasGTP<=MEKP_Phase2]]
normalized: E [true U [RasGTP<=MEKP_Phase2 & EX [ERKPP_Phase3<=Phase1]]]

abstracting: (ERKPP_Phase3<=Phase1)

FORMULA MAPK-PT-320-CTLCardinality-0 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: AG [[ERKP<=RasGTP & EF [MEKP_RafP<=MEKP]]]
normalized: ~ [E [true U ~ [[ERKP<=RasGTP & E [true U MEKP_RafP<=MEKP]]]]]

abstracting: (MEKP_RafP<=MEKP)

FORMULA MAPK-PT-320-CTLCardinality-3 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: E [~ [[3<=MEK_RafP | 2<=Raf_RasGTP]] U ~ [[ERKP_Phase3<=MEK | 3<=MEKPP]]]
normalized: E [~ [[3<=MEK_RafP | 2<=Raf_RasGTP]] U ~ [[ERKP_Phase3<=MEK | 3<=MEKPP]]]

abstracting: (3<=MEKPP)

FORMULA MAPK-PT-320-CTLCardinality-12 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: AG [[[[3<=MEKPP & 2<=MEKP_RafP] & 3<=Raf_RasGTP] | EF [MEKPP_Phase2<=RafP_Phase1]]]
normalized: ~ [E [true U ~ [[E [true U MEKPP_Phase2<=RafP_Phase1] | [3<=Raf_RasGTP & [3<=MEKPP & 2<=MEKP_RafP]]]]]]

abstracting: (2<=MEKP_RafP)

FORMULA MAPK-PT-320-CTLCardinality-15 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: AG [[[[2<=ERK & 2<=ERK] & ~ [RasGTP<=RafP_Phase1]] | ~ [~ [RafP_Phase1<=MEKPP_Phase2]]]]
normalized: ~ [E [true U ~ [[RafP_Phase1<=MEKPP_Phase2 | [~ [RasGTP<=RafP_Phase1] & [2<=ERK & 2<=ERK]]]]]]

abstracting: (2<=ERK)

FORMULA MAPK-PT-320-CTLCardinality-5 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: [[ERKPP<=Raf_RasGTP & E [ERKP<=MEKPP U Phase1<=MEK_RafP]] | AF [AF [1<=ERKP_MEKPP]]]
normalized: [~ [EG [EG [~ [1<=ERKP_MEKPP]]]] | [ERKPP<=Raf_RasGTP & E [ERKP<=MEKPP U Phase1<=MEK_RafP]]]

abstracting: (Phase1<=MEK_RafP)

FORMULA MAPK-PT-320-CTLCardinality-2 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: AG [[~ [[3<=ERKPP_Phase3 & Raf<=Phase2]] & [MEKP_RafP<=Phase3 | [1<=RasGTP | Phase2<=RafP_Phase1]]]]
normalized: ~ [E [true U ~ [[~ [[3<=ERKPP_Phase3 & Raf<=Phase2]] & [MEKP_RafP<=Phase3 | [1<=RasGTP | Phase2<=RafP_Phase1]]]]]]

abstracting: (Phase2<=RafP_Phase1)

FORMULA MAPK-PT-320-CTLCardinality-4 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: [~ [A [2<=Phase1 U ERKPP_Phase3<=RasGTP]] | [EF [[MEKP<=ERKPP | 2<=MEKPP_Phase2]] & [AG [2<=MEK] | [~ [ERKPP_Phase3<=Raf_RasGTP] & [Raf<=ERKPP | RasGTP<=RasGTP]]]]]
normalized: [[[~ [E [true U ~ [2<=MEK]]] | [[Raf<=ERKPP | RasGTP<=RasGTP] & ~ [ERKPP_Phase3<=Raf_RasGTP]]] & E [true U [MEKP<=ERKPP | 2<=MEKPP_Phase2]]] | ~ [[~ [EG [~ [ERKPP_Phase3<=RasGTP]]] & ~ [E [~ [ERKPP_Phase3<=RasGTP] U [~ [2<=Phase1] & ~ [ERKPP_Phase3<=RasGTP]]]]]]]

abstracting: (ERKPP_Phase3<=RasGTP)

FORMULA MAPK-PT-320-CTLCardinality-6 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: EF [~ [AX [3<=Phase3]]]
normalized: E [true U EX [~ [3<=Phase3]]]

abstracting: (3<=Phase3)
states: 2,616,258,420,259,142,304,600,788,022 (27)

FORMULA MAPK-PT-320-CTLCardinality-7 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: AG [1<=Phase2]
normalized: ~ [E [true U ~ [1<=Phase2]]]

abstracting: (1<=Phase2)
states: 2,616,258,717,736,851,701,790,100,620 (27)

FORMULA MAPK-PT-320-CTLCardinality-9 CANNOT_COMPUTE

MC time: 0m 0.000sec

totally nodes used: 15539547 (1.6e+07)
number of garbage collections: 0
fire ops cache: hits/miss/sum: 2179456373 77836378 2257292751
used/not used/entry size/cache size: 49305522 17803342 16 1024MB
basic ops cache: hits/miss/sum: 342975734 11862594 354838328
used/not used/entry size/cache size: 9385963 7391253 12 192MB
unary ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 8 128MB
abstract ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 12 192MB
state nr cache: hits/miss/sum: 18188923 511625 18700548
used/not used/entry size/cache size: 491286 7897322 32 256MB
max state cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 32 256MB
uniqueHash elements/entry size/size: 67108864 4 256MB
0 54716258
1 10792669
2 1370307
3 130481
4 10988
5 770
6 62
7 1170
8 295
9 117
>= 10 85747

Total processing time: 12m21.242sec


BK_STOP 1494457952431

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok

ptnet_zbdd.cc:255: Boundedness exception: net is not 1-bounded!

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:41790 (1393), effective:6880 (229)

initing FirstDep: 0m 0.002sec


sat_reach.icc:155: Timeout: after 218 sec


sat_reach.icc:155: Timeout: after 204 sec


iterations count:600 (20), effective:93 (3)
std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-320"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-320.tgz
mv MAPK-PT-320 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is MAPK-PT-320, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r031-blw7-149440473900210"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;