Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is MAPK-PT-008, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r031-blw7-149440473900201
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-008-CTLCardinality-0
FORMULA_NAME MAPK-PT-008-CTLCardinality-1
FORMULA_NAME MAPK-PT-008-CTLCardinality-10
FORMULA_NAME MAPK-PT-008-CTLCardinality-11
FORMULA_NAME MAPK-PT-008-CTLCardinality-12
FORMULA_NAME MAPK-PT-008-CTLCardinality-13
FORMULA_NAME MAPK-PT-008-CTLCardinality-14
FORMULA_NAME MAPK-PT-008-CTLCardinality-15
FORMULA_NAME MAPK-PT-008-CTLCardinality-2
FORMULA_NAME MAPK-PT-008-CTLCardinality-3
FORMULA_NAME MAPK-PT-008-CTLCardinality-4
FORMULA_NAME MAPK-PT-008-CTLCardinality-5
FORMULA_NAME MAPK-PT-008-CTLCardinality-6
FORMULA_NAME MAPK-PT-008-CTLCardinality-7
FORMULA_NAME MAPK-PT-008-CTLCardinality-8
FORMULA_NAME MAPK-PT-008-CTLCardinality-9

=== Now, execution of the tool begins

BK_START 1494456832372

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLCardinality.xml --memory=6

parse successfull
net created successfully

Net: MAPK_PT_008
(NrP: 22 NrTr: 30 NrArc: 90)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.104sec

parse successfull
net created successfully

Net: MAPK_PT_008
(NrP: 22 NrTr: 30 NrArc: 90)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 3.552sec


RS generation: 0m 0.010sec


-> reachability set: #nodes 259 (2.6e+02) #states 6,110,643 (6)



starting MCC model checker
--------------------------

checking: ~ [AG [EG [1<=ERK]]]
normalized: E [true U ~ [EG [1<=ERK]]]

abstracting: (1<=ERK)
states: 3,510,710 (6)
.
EG iterations: 1
-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.017sec

checking: ~ [EX [AG [1<=ERK]]]
normalized: ~ [EX [~ [E [true U ~ [1<=ERK]]]]]

abstracting: (1<=ERK)
states: 3,510,710 (6)
.-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [AF [ERKP_MEKPP<=ERKP_MEKPP]]
normalized: ~ [E [true U EG [~ [ERKP_MEKPP<=ERKP_MEKPP]]]]

abstracting: (ERKP_MEKPP<=ERKP_MEKPP)
states: 6,110,643 (6)
.
EG iterations: 1
-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: E [EF [2<=ERKP_MEKPP] U 1<=MEKP]
normalized: E [E [true U 2<=ERKP_MEKPP] U 1<=MEKP]

abstracting: (1<=MEKP)
states: 2,358,384 (6)
abstracting: (2<=ERKP_MEKPP)
states: 235,725 (5)
-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.015sec

checking: ~ [EF [AG [ERK_MEKPP<=Raf]]]
normalized: ~ [E [true U ~ [E [true U ~ [ERK_MEKPP<=Raf]]]]]

abstracting: (ERK_MEKPP<=Raf)
states: 5,752,573 (6)
-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.011sec

checking: EG [EF [~ [ERKP_Phase3<=Phase3]]]
normalized: EG [E [true U ~ [ERKP_Phase3<=Phase3]]]

abstracting: (ERKP_Phase3<=Phase3)
states: 5,432,671 (6)

EG iterations: 0
-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.005sec

checking: AG [ERKP_Phase3<=Phase1]
normalized: ~ [E [true U ~ [ERKP_Phase3<=Phase1]]]

abstracting: (ERKP_Phase3<=Phase1)
states: 5,672,318 (6)
-> the formula is FALSE

FORMULA MAPK-PT-008-CTLCardinality-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.019sec

checking: AG [[AF [2<=Phase3] & EX [ERKP_MEKPP<=Phase2]]]
normalized: ~ [E [true U ~ [[EX [ERKP_MEKPP<=Phase2] & ~ [EG [~ [2<=Phase3]]]]]]]

abstracting: (2<=Phase3)
states: 5,592,950 (6)
.
EG iterations: 1
abstracting: (ERKP_MEKPP<=Phase2)
states: 6,110,643 (6)
.-> the formula is FALSE

FORMULA MAPK-PT-008-CTLCardinality-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: AG [~ [[2<=ERKP_MEKPP & [1<=RafP | RafP<=Raf_RasGTP]]]]
normalized: ~ [E [true U [2<=ERKP_MEKPP & [1<=RafP | RafP<=Raf_RasGTP]]]]

abstracting: (RafP<=Raf_RasGTP)
states: 2,492,447 (6)
abstracting: (1<=RafP)
states: 4,701,298 (6)
abstracting: (2<=ERKP_MEKPP)
states: 235,725 (5)
-> the formula is FALSE

FORMULA MAPK-PT-008-CTLCardinality-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: E [[ERKPP_Phase3<=ERK_MEKPP | 1<=MEKPP_Phase2] U AG [1<=MEKP]]
normalized: E [[ERKPP_Phase3<=ERK_MEKPP | 1<=MEKPP_Phase2] U ~ [E [true U ~ [1<=MEKP]]]]

abstracting: (1<=MEKP)
states: 2,358,384 (6)
abstracting: (1<=MEKPP_Phase2)
states: 2,358,384 (6)
abstracting: (ERKPP_Phase3<=ERK_MEKPP)
states: 3,016,170 (6)
-> the formula is FALSE

FORMULA MAPK-PT-008-CTLCardinality-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.007sec

checking: EG [AG [[MEKP_Phase2<=MEKP_Phase2 | MEKP_RafP<=MEKP_RafP]]]
normalized: EG [~ [E [true U ~ [[MEKP_Phase2<=MEKP_Phase2 | MEKP_RafP<=MEKP_RafP]]]]]

abstracting: (MEKP_RafP<=MEKP_RafP)
states: 6,110,643 (6)
abstracting: (MEKP_Phase2<=MEKP_Phase2)
states: 6,110,643 (6)

EG iterations: 0
-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: [E [[2<=ERK | 2<=MEK] U ~ [2<=Phase1]] | [2<=RafP | 3<=RafP_Phase1]]
normalized: [E [[2<=ERK | 2<=MEK] U ~ [2<=Phase1]] | [2<=RafP | 3<=RafP_Phase1]]

abstracting: (3<=RafP_Phase1)
states: 2,211,510 (6)
abstracting: (2<=RafP)
states: 3,429,032 (6)
abstracting: (2<=Phase1)
states: 5,416,560 (6)
abstracting: (2<=MEK)
states: 744,156 (5)
abstracting: (2<=ERK)
states: 1,848,380 (6)
-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.011sec

checking: EF [[[ERK<=Phase2 & ~ [Raf_RasGTP<=ERKPP_Phase3]] & 3<=MEKPP]]
normalized: E [true U [[ERK<=Phase2 & ~ [Raf_RasGTP<=ERKPP_Phase3]] & 3<=MEKPP]]

abstracting: (3<=MEKPP)
states: 171,990 (5)
abstracting: (Raf_RasGTP<=ERKPP_Phase3)
states: 4,163,448 (6)
abstracting: (ERK<=Phase2)
states: 5,547,264 (6)
-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.015sec

checking: ~ [AG [[~ [ERK<=ERKP_MEKPP] | [ERKPP_Phase3<=ERKP_Phase3 & MEKP<=MEKP]]]]
normalized: E [true U ~ [[~ [ERK<=ERKP_MEKPP] | [ERKPP_Phase3<=ERKP_Phase3 & MEKP<=MEKP]]]]

abstracting: (MEKP<=MEKP)
states: 6,110,643 (6)
abstracting: (ERKPP_Phase3<=ERKP_Phase3)
states: 3,840,359 (6)
abstracting: (ERK<=ERKP_MEKPP)
states: 3,016,170 (6)
-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.009sec

checking: [~ [[AG [1<=ERK] & ~ [[3<=MEK_RafP & MEKPP<=MEK]]]] & [EF [[3<=MEKPP_Phase2 | Raf<=Phase2]] | 1<=RafP]]
normalized: [[E [true U [3<=MEKPP_Phase2 | Raf<=Phase2]] | 1<=RafP] & ~ [[~ [[3<=MEK_RafP & MEKPP<=MEK]] & ~ [E [true U ~ [1<=ERK]]]]]]

abstracting: (1<=ERK)
states: 3,510,710 (6)
abstracting: (MEKPP<=MEK)
states: 4,346,475 (6)
abstracting: (3<=MEK_RafP)
states: 72,912 (4)
abstracting: (1<=RafP)
states: 4,701,298 (6)
abstracting: (Raf<=Phase2)
states: 4,452,766 (6)
abstracting: (3<=MEKPP_Phase2)
states: 171,990 (5)
-> the formula is TRUE

FORMULA MAPK-PT-008-CTLCardinality-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.010sec

checking: E [~ [[Phase3<=MEK | 1<=MEK_RafP]] U [[ERK_MEKPP<=MEKPP & 1<=MEKPP_Phase2] & [Phase3<=RasGTP & 1<=ERK_MEKPP]]]
normalized: E [~ [[Phase3<=MEK | 1<=MEK_RafP]] U [[Phase3<=RasGTP & 1<=ERK_MEKPP] & [ERK_MEKPP<=MEKPP & 1<=MEKPP_Phase2]]]

abstracting: (1<=MEKPP_Phase2)
states: 2,358,384 (6)
abstracting: (ERK_MEKPP<=MEKPP)
states: 5,129,901 (6)
abstracting: (1<=ERK_MEKPP)
states: 1,368,759 (6)
abstracting: (Phase3<=RasGTP)
states: 738,193 (5)
abstracting: (1<=MEK_RafP)
states: 1,831,956 (6)
abstracting: (Phase3<=MEK)
states: 421,741 (5)
-> the formula is FALSE

FORMULA MAPK-PT-008-CTLCardinality-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.027sec

totally nodes used: 44760 (4.5e+04)
number of garbage collections: 0
fire ops cache: hits/miss/sum: 283906 191721 475627
used/not used/entry size/cache size: 229086 66879778 16 1024MB
basic ops cache: hits/miss/sum: 60508 52625 113133
used/not used/entry size/cache size: 102209 16675007 12 192MB
unary ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 8 128MB
abstract ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 12 192MB
state nr cache: hits/miss/sum: 5999 4771 10770
used/not used/entry size/cache size: 4771 8383837 32 256MB
max state cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 32 256MB
uniqueHash elements/entry size/size: 67108864 4 256MB
0 67069558
1 38060
2 717
3 203
4 84
5 32
6 18
7 20
8 14
9 10
>= 10 148

Total processing time: 0m 6.525sec


BK_STOP 1494456838988

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok

ptnet_zbdd.cc:255: Boundedness exception: net is not 1-bounded!

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.001sec


iterations count:1074 (35), effective:172 (5)

initing FirstDep: 0m 0.000sec


iterations count:505 (16), effective:81 (2)

iterations count:505 (16), effective:81 (2)

iterations count:398 (13), effective:62 (2)

iterations count:92 (3), effective:11 (0)

iterations count:198 (6), effective:33 (1)

iterations count:451 (15), effective:71 (2)

iterations count:231 (7), effective:40 (1)

iterations count:530 (17), effective:85 (2)

iterations count:398 (13), effective:62 (2)

iterations count:114 (3), effective:16 (0)

iterations count:101 (3), effective:17 (0)

iterations count:498 (16), effective:82 (2)

iterations count:636 (21), effective:102 (3)

iterations count:505 (16), effective:81 (2)

iterations count:84 (2), effective:14 (0)

iterations count:531 (17), effective:81 (2)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-008"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-008.tgz
mv MAPK-PT-008 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is MAPK-PT-008, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r031-blw7-149440473900201"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;