Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool lola
Input is GPPP-PT-C1000N0000001000, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r028-blw3-149440264500594
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1494727287357


Time: 3600 - MCC
----- Start make prepare stdout -----
checking for too many tokens
----- Start make result stdout -----
ReachabilityFireability @ GPPP-PT-C1000N0000001000 @ 3540 seconds
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C1000N0000001000-ReachabilityFireability.task
lola: A (G ((NOT FIREABLE(Transketolase2) OR (NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Transketolase2)) OR FIREABLE(TIM_backward)))) : E (F (FIREABLE(Enolase))) : A (G ((NOT FIREABLE(Phosphofructokinase) OR NOT FIREABLE(Transaldolase) OR (NOT FIREABLE(remove) AND NOT FIREABLE(Transaldolase)) OR NOT FIREABLE(Phosphoglycerate_mutase)))) : E (F ((FIREABLE(GAP_dehydrogenase) AND FIREABLE(Transketolase1) AND FIREABLE(Ru5P_isomerase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(GAP_dehydrogenase) OR (NOT FIREABLE(Transketolase1) AND NOT FIREABLE(Phosphoclucose_isomerase)))))) : A (G (())) : E (F ((NOT FIREABLE(Glutathione_oxidation) AND NOT FIREABLE(Hexokinase) AND FIREABLE(Enolase) AND (FIREABLE(generate) OR FIREABLE(Glutathione_reductose))))) : E (F (((((FIREABLE(Transaldolase) OR FIREABLE(Ru5P_epimerase)) AND FIREABLE(Glutathione_reductose)) OR (FIREABLE(remove) AND (FIREABLE(Ru5P_epimerase) OR FIREABLE(TIM_forward)))) AND FIREABLE(Pyruvate_kinase)))) : A (G ((NOT FIREABLE(Enolase) OR (NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND (FIREABLE(G6P_dehydrogenase) OR FIREABLE(Pyruvate_kinase)))))) : A (G (((NOT FIREABLE(Phosphoglycerate_mutase) AND NOT FIREABLE(Phosphoclucose_isomerase)) OR NOT FIREABLE(GAP_dehydrogenase) OR FIREABLE(Hexokinase)))) : E (F (FIREABLE(Phosphoglycerate_mutase))) : A (G ((((FIREABLE(Hexokinase) OR FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Phosphoglycerate_mutase))) OR NOT FIREABLE(G6P_dehydrogenase)))) : E (F ((FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Phosphofructokinase) AND ((FIREABLE(Pyruvate_kinase) AND FIREABLE(Aldolase) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Transaldolase)) OR FIREABLE(remove))))) : A (G (((NOT FIREABLE(Aldolase) OR NOT FIREABLE(Ru5P_isomerase) OR (FIREABLE(Aldolase) AND NOT FIREABLE(TIM_backward))) AND (NOT FIREABLE(Transketolase2) OR FIREABLE(Transketolase1) OR FIREABLE(Phosphoglycerate_kinase))))) : A (G (((FIREABLE(Glutathione_oxidation) AND FIREABLE(Enolase)) OR NOT FIREABLE(Transketolase2) OR (NOT FIREABLE(Lactate_dehydrogenase) AND NOT FIREABLE(G6P_dehydrogenase)) OR FIREABLE(TIM_forward) OR FIREABLE(GAP_dehydrogenase) OR FIREABLE(TIM_backward)))) : A (G (())) : E (F ((((FIREABLE(Glutathione_oxidation) AND FIREABLE(generate)) OR FIREABLE(Phosphoglycerate_mutase) OR (FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Phosphoclucose_isomerase))) AND NOT FIREABLE(Transaldolase))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Transketolase2) OR (NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Transketolase2)) OR FIREABLE(TIM_backward))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 10 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability.sara
lola: ========================================
lola: subprocess 1 will run for 236 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Enolase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability.sara
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Phosphofructokinase) OR NOT FIREABLE(Transaldolase) OR (NOT FIREABLE(remove) AND NOT FIREABLE(Transaldolase)) OR NOT FIREABLE(Phosphoglycerate_mutase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 17 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-2.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-2.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 2991249 markings, 8795008 edges, 598250 markings/sec, 0 secs
lola: sara is running 5 secs || 5832833 markings, 17238252 edges, 568317 markings/sec, 5 secs
lola: sara is running 10 secs || 8612833 markings, 25505615 edges, 556000 markings/sec, 10 secs
lola: sara is running 15 secs || 11383541 markings, 33746023 edges, 554142 markings/sec, 15 secs
lola: sara is running 20 secs || 14128250 markings, 41910160 edges, 548942 markings/sec, 20 secs
lola: sara is running 25 secs || 16894887 markings, 50145070 edges, 553327 markings/sec, 25 secs
lola: sara is running 30 secs || 19718763 markings, 58564142 edges, 564775 markings/sec, 30 secs
lola: sara is running 35 secs || 22449157 markings, 66690040 edges, 546079 markings/sec, 35 secs
lola: sara is running 40 secs || 25189041 markings, 74839632 edges, 547977 markings/sec, 40 secs
lola: sara is running 45 secs || 27858331 markings, 82793992 edges, 533858 markings/sec, 45 secs
lola: sara is running 50 secs || 30577361 markings, 90896732 edges, 543806 markings/sec, 50 secs
lola: sara is running 55 secs || 33287095 markings, 98959469 edges, 541947 markings/sec, 55 secs
lola: sara is running 60 secs || 36006019 markings, 107067467 edges, 543785 markings/sec, 60 secs
lola: sara is running 65 secs || 38716618 markings, 115141872 edges, 542120 markings/sec, 65 secs
lola: sara is running 70 secs || 41398321 markings, 123118566 edges, 536341 markings/sec, 70 secs
lola: sara is running 75 secs || 44122911 markings, 131247627 edges, 544918 markings/sec, 75 secs
lola: sara is running 80 secs || 46771009 markings, 139138588 edges, 529620 markings/sec, 80 secs
lola: sara is running 85 secs || 49487615 markings, 147224739 edges, 543321 markings/sec, 85 secs
lola: sara is running 90 secs || 52132180 markings, 155096867 edges, 528913 markings/sec, 90 secs
lola: sara is running 95 secs || 54836448 markings, 163160946 edges, 540854 markings/sec, 95 secs
lola: sara is running 100 secs || 57473268 markings, 171028841 edges, 527364 markings/sec, 100 secs
lola: sara is running 105 secs || 60159633 markings, 179029063 edges, 537273 markings/sec, 105 secs
lola: sara is running 110 secs || 62816367 markings, 186938517 edges, 531347 markings/sec, 110 secs
lola: sara is running 115 secs || 65484713 markings, 194881898 edges, 533669 markings/sec, 115 secs
lola: sara is running 120 secs || 68137321 markings, 202807191 edges, 530522 markings/sec, 120 secs
lola: sara is running 125 secs || 70746803 markings, 210564608 edges, 521896 markings/sec, 125 secs
lola: sara is running 130 secs || 73396022 markings, 218464449 edges, 529844 markings/sec, 130 secs
lola: sara is running 135 secs || 76038542 markings, 226346813 edges, 528504 markings/sec, 135 secs
lola: sara is running 140 secs || 78664670 markings, 234173149 edges, 525226 markings/sec, 140 secs
lola: sara is running 145 secs || 81285151 markings, 241989481 edges, 524096 markings/sec, 145 secs
lola: sara is running 150 secs || 83939612 markings, 249885295 edges, 530892 markings/sec, 150 secs
lola: sara is running 155 secs || 86560008 markings, 257684820 edges, 524079 markings/sec, 155 secs
lola: sara is running 160 secs || 89126204 markings, 265363952 edges, 513239 markings/sec, 160 secs
lola: sara is running 165 secs || 91722470 markings, 273082669 edges, 519253 markings/sec, 165 secs
lola: sara is running 170 secs || 94297991 markings, 280764284 edges, 515104 markings/sec, 170 secs
lola: sara is running 175 secs || 96893470 markings, 288489362 edges, 519096 markings/sec, 175 secs
lola: sara is running 180 secs || 99498793 markings, 296249946 edges, 521065 markings/sec, 180 secs
lola: sara is running 185 secs || 102102569 markings, 304030551 edges, 520755 markings/sec, 185 secs
lola: sara is running 190 secs || 104719544 markings, 311834505 edges, 523395 markings/sec, 190 secs
lola: sara is running 195 secs || 107375866 markings, 319723401 edges, 531264 markings/sec, 195 secs
lola: sara is running 200 secs || 109999800 markings, 327541761 edges, 524787 markings/sec, 200 secs
lola: sara is running 205 secs || 112606407 markings, 335311092 edges, 521321 markings/sec, 205 secs
lola: sara is running 210 secs || 115257482 markings, 343212412 edges, 530215 markings/sec, 210 secs
lola: sara is running 215 secs || 117877576 markings, 351023722 edges, 524019 markings/sec, 215 secs
lola: sara is running 220 secs || 120425840 markings, 358644368 edges, 509653 markings/sec, 220 secs
lola: sara is running 225 secs || 123046447 markings, 366440378 edges, 524121 markings/sec, 225 secs
lola: sara is running 230 secs || 125580165 markings, 373985317 edges, 506744 markings/sec, 230 secs
lola: sara is running 235 secs || 128150724 markings, 381674245 edges, 514112 markings/sec, 235 secs
lola: sara is running 240 secs || 130666978 markings, 389143198 edges, 503251 markings/sec, 240 secs
lola: sara is running 245 secs || 133205816 markings, 396732502 edges, 507768 markings/sec, 245 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 3 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(GAP_dehydrogenase) AND FIREABLE(Transketolase1) AND FIREABLE(Ru5P_isomerase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(GAP_dehydrogenase) OR (NOT FIREABLE(Transketolase1) AND NOT FIREABLE(Phosphoclucose_isomerase))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 19 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-3.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-3.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: subprocess 4 will run for 273 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (()))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C1000N0000001000-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: ========================================
lola: subprocess 5 will run for 298 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(Glutathione_oxidation) AND NOT FIREABLE(Hexokinase) AND FIREABLE(Enolase) AND (FIREABLE(generate) OR FIREABLE(Glutathione_reductose)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 18 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-5.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 6 will run for 328 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((((FIREABLE(Transaldolase) OR FIREABLE(Ru5P_epimerase)) AND FIREABLE(Glutathione_reductose)) OR (FIREABLE(remove) AND (FIREABLE(Ru5P_epimerase) OR FIREABLE(TIM_forward)))) AND FIREABLE(Pyruvate_kinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: ========================================
lola: state equation: Generated DNF with 24 literals and 4 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 7 will run for 365 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Enolase) OR (NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND (FIREABLE(G6P_dehydrogenase) OR FIREABLE(Pyruvate_kinase))))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 23 literals and 8 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: subprocess 8 will run for 410 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((NOT FIREABLE(Phosphoglycerate_mutase) AND NOT FIREABLE(Phosphoclucose_isomerase)) OR NOT FIREABLE(GAP_dehydrogenase) OR FIREABLE(Hexokinase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: ========================================
lola: RUNNING
lola: state equation: Generated DNF with 26 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-8.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-8.sara.
sara: place or transition ordering is non-deterministic
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 9 will run for 469 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Phosphoglycerate_mutase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: subprocess 10 will run for 547 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((((FIREABLE(Hexokinase) OR FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Phosphoglycerate_mutase))) OR NOT FIREABLE(G6P_dehydrogenase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: ========================================
lola: state equation: Generated DNF with 24 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-10.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 11 will run for 657 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Phosphofructokinase) AND ((FIREABLE(Pyruvate_kinase) AND FIREABLE(Aldolase) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Transaldolase)) OR FIREABLE(remove)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 16 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-11.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-11.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 3797149 markings, 8180164 edges, 759430 markings/sec, 0 secs
lola: sara is running 5 secs || 7691219 markings, 16626307 edges, 778814 markings/sec, 5 secs
lola: sara is running 10 secs || 11538484 markings, 24976105 edges, 769453 markings/sec, 10 secs
lola: sara is running 15 secs || 15395170 markings, 33350513 edges, 771337 markings/sec, 15 secs
lola: sara is running 20 secs || 19246722 markings, 41714358 edges, 770310 markings/sec, 20 secs
lola: sara is running 25 secs || 23081868 markings, 50042904 edges, 767029 markings/sec, 25 secs
lola: sara is running 30 secs || 26898113 markings, 58332104 edges, 763249 markings/sec, 30 secs
lola: sara is running 35 secs || 30702064 markings, 66595278 edges, 760790 markings/sec, 35 secs
lola: sara is running 40 secs || 34493276 markings, 74832256 edges, 758242 markings/sec, 40 secs
lola: sara is running 45 secs || 38270880 markings, 83039188 edges, 755521 markings/sec, 45 secs
lola: sara is running 50 secs || 42048571 markings, 91246402 edges, 755538 markings/sec, 50 secs
lola: sara is running 55 secs || 45760107 markings, 99309251 edges, 742307 markings/sec, 55 secs
lola: sara is running 60 secs || 49480938 markings, 107396210 edges, 744166 markings/sec, 60 secs
lola: sara is running 65 secs || 53207407 markings, 115490539 edges, 745294 markings/sec, 65 secs
lola: sara is running 70 secs || 56951657 markings, 123628150 edges, 748850 markings/sec, 70 secs
lola: sara is running 75 secs || 60711142 markings, 131797437 edges, 751897 markings/sec, 75 secs
lola: sara is running 80 secs || 64457801 markings, 139940375 edges, 749332 markings/sec, 80 secs
lola: sara is running 85 secs || 68192131 markings, 148054844 edges, 746866 markings/sec, 85 secs
lola: sara is running 90 secs || 71937793 markings, 156192635 edges, 749132 markings/sec, 90 secs
lola: sara is running 95 secs || 75677127 markings, 164318742 edges, 747867 markings/sec, 95 secs
lola: sara is running 100 secs || 79370412 markings, 172346455 edges, 738657 markings/sec, 100 secs
lola: sara is running 105 secs || 83039383 markings, 180319811 edges, 733794 markings/sec, 105 secs
lola: sara is running 110 secs || 86716506 markings, 188309849 edges, 735425 markings/sec, 110 secs
lola: sara is running 115 secs || 90424052 markings, 196369260 edges, 741509 markings/sec, 115 secs
lola: sara is running 120 secs || 94141519 markings, 204449371 edges, 743493 markings/sec, 120 secs
lola: sara is running 125 secs || 97803348 markings, 212406725 edges, 732366 markings/sec, 125 secs
lola: sara is running 130 secs || 101441999 markings, 220316485 edges, 727730 markings/sec, 130 secs
lola: sara is running 135 secs || 105080496 markings, 228225045 edges, 727699 markings/sec, 135 secs
lola: sara is running 140 secs || 108707635 markings, 236107884 edges, 725428 markings/sec, 140 secs
lola: sara is running 145 secs || 112333482 markings, 243987028 edges, 725169 markings/sec, 145 secs
lola: sara is running 150 secs || 115968278 markings, 251889299 edges, 726959 markings/sec, 150 secs
lola: sara is running 155 secs || 119603957 markings, 259788292 edges, 727136 markings/sec, 155 secs
lola: sara is running 160 secs || 122311036 markings, 265672295 edges, 541416 markings/sec, 160 secs
lola: sara is running 165 secs || 125950818 markings, 273583387 edges, 727956 markings/sec, 165 secs
lola: sara is running 170 secs || 129646679 markings, 281616469 edges, 739172 markings/sec, 170 secs
lola: sara is running 175 secs || 133363696 markings, 289695113 edges, 743403 markings/sec, 175 secs
lola: sara is running 180 secs || 137047026 markings, 297704065 edges, 736666 markings/sec, 180 secs
lola: sara is running 185 secs || 140726861 markings, 305699922 edges, 735967 markings/sec, 185 secs
lola: sara is running 190 secs || 144422142 markings, 313733729 edges, 739056 markings/sec, 190 secs
lola: sara is running 195 secs || 148113933 markings, 321759277 edges, 738358 markings/sec, 195 secs
lola: sara is running 200 secs || 151796236 markings, 329763438 edges, 736461 markings/sec, 200 secs
lola: sara is running 205 secs || 155466723 markings, 337741123 edges, 734097 markings/sec, 205 secs
lola: sara is running 210 secs || 159163332 markings, 345775352 edges, 739322 markings/sec, 210 secs
lola: sara is running 215 secs || 162859036 markings, 353812139 edges, 739141 markings/sec, 215 secs
lola: sara is running 220 secs || 166567585 markings, 361871315 edges, 741710 markings/sec, 220 secs
lola: sara is running 225 secs || 166918045 markings, 362633088 edges, 70092 markings/sec, 225 secs
lola: sara is running 230 secs || 166918139 markings, 362633292 edges, 19 markings/sec, 230 secs
lola: sara is running 235 secs || 166949958 markings, 362702924 edges, 6364 markings/sec, 235 secs
lola: sara is running 240 secs || 166950041 markings, 362703111 edges, 17 markings/sec, 240 secs
lola: sara is running 245 secs || 166950144 markings, 362703336 edges, 21 markings/sec, 245 secs
lola: sara is running 250 secs || 166976784 markings, 362761638 edges, 5328 markings/sec, 250 secs
lola: sara is running 255 secs || 166976886 markings, 362761869 edges, 20 markings/sec, 255 secs
lola: sara is running 260 secs || 166985452 markings, 362780606 edges, 1713 markings/sec, 260 secs
lola: sara is running 265 secs || 166985536 markings, 362780791 edges, 17 markings/sec, 265 secs
lola: sara is running 270 secs || 167021846 markings, 362860260 edges, 7262 markings/sec, 270 secs
lola: sara is running 275 secs || 167031243 markings, 362880824 edges, 1879 markings/sec, 275 secs
lola: sara is running 280 secs || 167031354 markings, 362881068 edges, 22 markings/sec, 280 secs
lola: sara is running 285 secs || 167031459 markings, 362881301 edges, 21 markings/sec, 285 secs
lola: sara is running 290 secs || 167043890 markings, 362908508 edges, 2486 markings/sec, 290 secs
lola: sara is running 295 secs || 167043988 markings, 362908717 edges, 20 markings/sec, 295 secs
lola: sara is running 300 secs || 167044126 markings, 362909021 edges, 28 markings/sec, 300 secs
lola: sara is running 305 secs || 167044224 markings, 362909237 edges, 20 markings/sec, 305 secs
lola: sara is running 310 secs || 167044330 markings, 362909462 edges, 21 markings/sec, 310 secs
lola: sara is running 315 secs || 167044430 markings, 362909680 edges, 20 markings/sec, 315 secs
lola: sara is running 320 secs || 167079523 markings, 362981261 edges, 7019 markings/sec, 320 secs
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 12 will run for 739 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((NOT FIREABLE(Aldolase) OR NOT FIREABLE(Ru5P_isomerase) OR (FIREABLE(Aldolase) AND NOT FIREABLE(TIM_backward))) AND (NOT FIREABLE(Transketolase2) OR FIREABLE(Transketolase1) OR FIREABLE(Phosphoglycerate_kinase)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 12 literals and 3 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: subprocess 13 will run for 986 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((FIREABLE(Glutathione_oxidation) AND FIREABLE(Enolase)) OR NOT FIREABLE(Transketolase2) OR (NOT FIREABLE(Lactate_dehydrogenase) AND NOT FIREABLE(G6P_dehydrogenase)) OR FIREABLE(TIM_forward) OR FIREABLE(GAP_dehydrogenase) OR FIREABLE(TIM_backward))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: lola: ========================================
state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 136 literals and 16 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 14 will run for 1479 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (()))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C1000N0000001000-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: ========================================
lola: subprocess 15 will run for 2958 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((((FIREABLE(Glutathione_oxidation) AND FIREABLE(generate)) OR FIREABLE(Phosphoglycerate_mutase) OR (FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Phosphoclucose_isomerase))) AND NOT FIREABLE(Transaldolase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 39 literals and 12 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: RESULT
lola:
SUMMARY: no yes unknown no yes yes yes no no yes no unknown no no yes yes
lola: ========================================
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-0 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-1 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-3 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-4 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-6 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-7 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-8 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-10 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-12 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-13 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-14 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-15 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stdout -----

BK_STOP 1494727869693

--------------------
content from stderr:

----- Start make prepare stderr -----
----- Start make result stderr -----
----- Start make result stderr -----
----- Kill lola and sara stderr -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C1000N0000001000"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C1000N0000001000.tgz
mv GPPP-PT-C1000N0000001000 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool lola"
echo " Input is GPPP-PT-C1000N0000001000, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r028-blw3-149440264500594"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;