Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
........
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is GPPP-PT-C0001N0000000010, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r021-blw3-149440255300517
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-0
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-1
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-10
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-11
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-12
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-13
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-14
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-15
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-2
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-3
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-4
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-5
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-6
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-7
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-8
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1494464495872

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --memory=6

parse successfull
net created successfully

Net: GPPP_PT_C0001N0000000010
(NrP: 33 NrTr: 22 NrArc: 83)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.208sec

parse successfull
net created successfully

Net: GPPP_PT_C0001N0000000010
(NrP: 33 NrTr: 22 NrArc: 83)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 3.655sec


RS generation: 0m 0.023sec


-> reachability set: #nodes 1088 (1.1e+03) #states 1,655,346 (6)



starting MCC model checker
--------------------------

checking: EF [IS_FIREABLE [Pyruvate_kinase]]
normalized: E [true U IS_FIREABLE [Pyruvate_kinase]]

-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.017sec

checking: EF [EG [EG [IS_FIREABLE [Enolase]]]]
normalized: E [true U EG [EG [IS_FIREABLE [Enolase]]]]

..................................................................................
EG iterations: 82
.
EG iterations: 1
-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.089sec

checking: EX [AG [~ [IS_FIREABLE [generate]]]]
normalized: EX [~ [E [true U IS_FIREABLE [generate]]]]

.-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.015sec

checking: EF [IS_FIREABLE [remove]]
normalized: E [true U IS_FIREABLE [remove]]

-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.014sec

checking: EG [AG [EF [IS_FIREABLE [Phosphofructokinase]]]]
normalized: EG [~ [E [true U ~ [E [true U IS_FIREABLE [Phosphofructokinase]]]]]]


EG iterations: 0
-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.013sec

checking: IS_FIREABLE [Phosphoglycerate_mutase]
normalized: IS_FIREABLE [Phosphoglycerate_mutase]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: AG [IS_FIREABLE [TIM_backward]]
normalized: ~ [E [true U ~ [IS_FIREABLE [TIM_backward]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: ~ [AF [IS_FIREABLE [Ru5P_epimerase]]]
normalized: EG [~ [IS_FIREABLE [Ru5P_epimerase]]]

.........................................................................
EG iterations: 73
-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.042sec

checking: E [AX [~ [IS_FIREABLE [Phosphoglycerate_mutase]]] U EG [IS_FIREABLE [Pyruvate_kinase]]]
normalized: E [~ [EX [IS_FIREABLE [Phosphoglycerate_mutase]]] U EG [IS_FIREABLE [Pyruvate_kinase]]]

..................................................................................
EG iterations: 82
.-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.086sec

checking: ~ [E [EG [IS_FIREABLE [remove]] U AF [IS_FIREABLE [TIM_forward]]]]
normalized: ~ [E [EG [IS_FIREABLE [remove]] U ~ [EG [~ [IS_FIREABLE [TIM_forward]]]]]]

...................................................................................................................................
EG iterations: 131
....................................................
EG iterations: 52
-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.146sec

checking: EF [[IS_FIREABLE [generate] & IS_FIREABLE [GAP_dehydrogenase]]]
normalized: E [true U [IS_FIREABLE [generate] & IS_FIREABLE [GAP_dehydrogenase]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EG [[EF [[IS_FIREABLE [Pyruvate_kinase] & IS_FIREABLE [Transketolase2]]] | ~ [~ [IS_FIREABLE [Phosphoglycerate_mutase]]]]]
normalized: EG [[E [true U [IS_FIREABLE [Pyruvate_kinase] & IS_FIREABLE [Transketolase2]]] | IS_FIREABLE [Phosphoglycerate_mutase]]]


EG iterations: 0
-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.013sec

checking: [IS_FIREABLE [Transketolase2] | AG [EF [[IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Phosphoglycerate_mutase]]]]]
normalized: [~ [E [true U ~ [E [true U [IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Phosphoglycerate_mutase]]]]]] | IS_FIREABLE [Transketolase2]]

-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.015sec

checking: EF [[AX [[IS_FIREABLE [Glutathione_reductose] & IS_FIREABLE [Aldolase]]] & ~ [~ [[IS_FIREABLE [Transketolase2] & IS_FIREABLE [Transaldolase]]]]]]
normalized: E [true U [[IS_FIREABLE [Transketolase2] & IS_FIREABLE [Transaldolase]] & ~ [EX [~ [[IS_FIREABLE [Glutathione_reductose] & IS_FIREABLE [Aldolase]]]]]]]

.-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.004sec

checking: ~ [[A [IS_FIREABLE [Lactate_dehydrogenase] U [IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [TIM_forward]]] & [~ [AX [IS_FIREABLE [generate]]] | EG [[IS_FIREABLE [Transaldolase] & IS_FIREABLE [Phosphoclucose_isomerase]]]]]]
normalized: ~ [[[EG [[IS_FIREABLE [Transaldolase] & IS_FIREABLE [Phosphoclucose_isomerase]]] | EX [~ [IS_FIREABLE [generate]]]] & [~ [EG [~ [[IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [TIM_forward]]]]] & ~ [E [~ [[IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [TIM_forward]]] U [~ [IS_FIREABLE [Lactate_dehydrogenase]] & ~ [[IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [TIM_forward]]]]]]]]]

...............................................................................................................
EG iterations: 111
..
EG iterations: 1
-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.137sec

checking: [~ [[EF [[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Enolase]]] | [[[IS_FIREABLE [Lactate_dehydrogenase] | IS_FIREABLE [Hexokinase]] | [IS_FIREABLE [generate] & IS_FIREABLE [Aldolase]]] & ~ [IS_FIREABLE [generate]]]]] | A [[[IS_FIREABLE [generate] | IS_FIREABLE [Transketolase2]] | [IS_FIREABLE [remove] | IS_FIREABLE [Glutathione_oxidation]]] U AX [IS_FIREABLE [Aldolase]]]]
normalized: [[~ [EG [EX [~ [IS_FIREABLE [Aldolase]]]]] & ~ [E [EX [~ [IS_FIREABLE [Aldolase]]] U [~ [[[IS_FIREABLE [remove] | IS_FIREABLE [Glutathione_oxidation]] | [IS_FIREABLE [generate] | IS_FIREABLE [Transketolase2]]]] & EX [~ [IS_FIREABLE [Aldolase]]]]]]] | ~ [[[~ [IS_FIREABLE [generate]] & [[IS_FIREABLE [generate] & IS_FIREABLE [Aldolase]] | [IS_FIREABLE [Lactate_dehydrogenase] | IS_FIREABLE [Hexokinase]]]] | E [true U [IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Enolase]]]]]]

....
EG iterations: 1
-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.039sec

totally nodes used: 270121 (2.7e+05)
number of garbage collections: 0
fire ops cache: hits/miss/sum: 529730 605506 1135236
used/not used/entry size/cache size: 827665 66281199 16 1024MB
basic ops cache: hits/miss/sum: 106336 122992 229328
used/not used/entry size/cache size: 262397 16514819 12 192MB
unary ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 8 128MB
abstract ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 12 192MB
state nr cache: hits/miss/sum: 568 1088 1656
used/not used/entry size/cache size: 1088 8387520 32 256MB
max state cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 32 256MB
uniqueHash elements/entry size/size: 67108864 4 256MB
0 66854028
1 248841
2 4752
3 681
4 162
5 67
6 65
7 14
8 11
9 8
>= 10 235

Total processing time: 0m 7.220sec


BK_STOP 1494464503199

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok

ptnet_zbdd.cc:255: Boundedness exception: net is not 1-bounded!

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:1795 (81), effective:420 (19)

initing FirstDep: 0m 0.000sec


iterations count:171 (7), effective:38 (1)

iterations count:258 (11), effective:67 (3)

iterations count:359 (16), effective:85 (3)

iterations count:359 (16), effective:85 (3)

iterations count:310 (14), effective:75 (3)

iterations count:91 (4), effective:10 (0)

iterations count:24 (1), effective:1 (0)

iterations count:22 (1), effective:0 (0)

iterations count:420 (19), effective:100 (4)

iterations count:270 (12), effective:68 (3)

iterations count:29 (1), effective:7 (0)

iterations count:249 (11), effective:57 (2)

iterations count:57 (2), effective:13 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000000010"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000000010.tgz
mv GPPP-PT-C0001N0000000010 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0001N0000000010, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r021-blw3-149440255300517"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;