Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool itstools
Input is CircadianClock-PT-100000, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r010-csrt-149436129900611
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME CircadianClock-PT-100000-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1496288415522


Using solver YICES2 to compute partial order matrices.
Built C files in :
/home/mcc/execution
its-ctl command run as :

/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201705302212/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
Exit code :134
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 16 rows 14 cols
invariant : 1'da + 1'da_a= 1
invariant : 1'mr + 1'mr_cap= 100000
invariant : 1'dr + 1'dr_a= 1
invariant : 1'a + 1'a_cap= 100000
invariant : 1'ma + 1'ma_cap= 100000
invariant : 1'r + 1'r_cap= 100000
invariant : 1'c + 1'c_cap= 100000
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Exit code :0
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Exit code :0
Exit code :255

BK_STOP 1496289689136

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ java -Dosgi.requiredJavaVersion=1.6 -Xss8m -Xms40m -Xmx8192m -Declipse.pde.launch=true -Dfile.encoding=UTF-8 -classpath /home/mcc/BenchKit//eclipse/plugins/org.eclipse.equinox.launcher_1.3.201.v20161025-1711.jar org.eclipse.equinox.launcher.Main -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -nl en_US -consoleLog -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
Jun 01, 2017 3:40:17 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 01, 2017 3:40:17 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 47 ms
Jun 01, 2017 3:40:17 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 14 places.
Jun 01, 2017 3:40:17 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 16 transitions.
Jun 01, 2017 3:40:17 AM fr.lip6.move.gal.logic.togal.ToGalTransformer toGal
WARNING: Unknown predicate type in boolean expression fr.lip6.move.gal.logic.impl.DeadlockImpl
Jun 01, 2017 3:40:17 AM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property CircadianClock-PT-100000-ReachabilityDeadlock-0 is trivially true : it is verified in initial state.
Jun 01, 2017 3:40:17 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 47 ms
Jun 01, 2017 3:40:17 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 11 ms
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.itstools.Runner runTool
INFO: Standard error output from running tool CommandLine [args=[/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201705302212/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'char const*'

Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 7 place invariants in 9 ms
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 14 variables to be positive in 34 ms
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 16 transitions.
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed :0/16 took 86 ms. Total solver calls (SAT/UNSAT): 7(3/4)
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 128 ms. Total solver calls (SAT/UNSAT): 96(44/52)
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 16 transitions.
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 28 ms. Total solver calls (SAT/UNSAT): 96(48/48)
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 16 transitions.
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished enabling matrix. took 48 ms. Total solver calls (SAT/UNSAT): 136(124/12)
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 16 transitions.
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 82 ms. Total solver calls (SAT/UNSAT): 22(0/22)
Jun 01, 2017 3:40:18 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 398ms conformant to PINS in folder :/home/mcc/execution
Jun 01, 2017 4:01:28 AM fr.lip6.move.gal.itstools.Runner runTool
INFO: Standard error output from running tool CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-seq, ./gal.so, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
pins2lts-seq, 0.001: Registering PINS so language module
pins2lts-seq, 0.001: Loading model from ./gal.so
pins2lts-seq, 0.011: library has no initializer
pins2lts-seq, 0.011: loading model GAL
pins2lts-seq, 0.012: completed loading model GAL
pins2lts-seq, 0.012: Initializing POR dependencies: labels 17, guards 16
pins2lts-seq, 0.012: There are 17 state labels and 1 edge labels
pins2lts-seq, 0.012: State length is 14, there are 16 groups
pins2lts-seq, 0.012: Running dfs search strategy
pins2lts-seq, 0.012: Using a tree for state storage
pins2lts-seq, 0.012: Visible groups: 0 / 16, labels: 0 / 17
pins2lts-seq, 0.012: POR cycle proviso: none
pins2lts-seq, 0.152: explored 10000 levels ~10000 states ~89974 transitions
pins2lts-seq, 0.258: explored 20000 levels ~20000 states ~179974 transitions
pins2lts-seq, 0.495: explored 40000 levels ~40000 states ~359974 transitions
pins2lts-seq, 1.002: explored 80000 levels ~80000 states ~719974 transitions
pins2lts-seq, 2.112: explored 160000 levels ~160000 states ~1379976 transitions
pins2lts-seq, 4.366: explored 320000 levels ~320000 states ~2759975 transitions
pins2lts-seq, 9.211: explored 640000 levels ~640000 states ~5399991 transitions
pins2lts-seq, 15.887: explored 1280000 levels ~1280000 states ~9379984 transitions
pins2lts-seq, 31.929: explored 2560000 levels ~2560000 states ~19059970 transitions
pins2lts-seq, 64.455: explored 5119999 levels ~5120000 states ~35479925 transitions
pins2lts-seq, 139.579: explored 10239999 levels ~10240000 states ~73239987 transitions
pins2lts-seq, 277.889: explored 20479999 levels ~20480000 states ~142318907 transitions
pins2lts-seq, 599.129: explored 40959999 levels ~40960000 states ~290943371 transitions
pins2lts-seq, 1181.961: explored 81919999 levels ~81920000 states ~587888116 transitions
pins2lts-seq, 1269.110, ** error **: out of memory trying to resize to 4294967296

LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-seq, ./gal.so, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
Status WARNING: fr.lip6.move.gal code=255 pins2lts-seq, 0.001: Registering PINS so language module
pins2lts-seq, 0.001: Loading model from ./gal.so
pins2lts-seq, 0.011: library has no initializer
pins2lts-seq, 0.011: loading model GAL
pins2lts-seq, 0.012: completed loading model GAL
pins2lts-seq, 0.012: Initializing POR dependencies: labels 17, guards 16
pins2lts-seq, 0.012: There are 17 state labels and 1 edge labels
pins2lts-seq, 0.012: State length is 14, there are 16 groups
pins2lts-seq, 0.012: Running dfs search strategy
pins2lts-seq, 0.012: Using a tree for state storage
pins2lts-seq, 0.012: Visible groups: 0 / 16, labels: 0 / 17
pins2lts-seq, 0.012: POR cycle proviso: none
pins2lts-seq, 0.152: explored 10000 levels ~10000 states ~89974 transitions
pins2lts-seq, 0.258: explored 20000 levels ~20000 states ~179974 transitions
pins2lts-seq, 0.495: explored 40000 levels ~40000 states ~359974 transitions
pins2lts-seq, 1.002: explored 80000 levels ~80000 states ~719974 transitions
pins2lts-seq, 2.112: explored 160000 levels ~160000 states ~1379976 transitions
pins2lts-seq, 4.366: explored 320000 levels ~320000 states ~2759975 transitions
pins2lts-seq, 9.211: explored 640000 levels ~640000 states ~5399991 transitions
pins2lts-seq, 15.887: explored 1280000 levels ~1280000 states ~9379984 transitions
pins2lts-seq, 31.929: explored 2560000 levels ~2560000 states ~19059970 transitions
pins2lts-seq, 64.455: explored 5119999 levels ~5120000 states ~35479925 transitions
pins2lts-seq, 139.579: explored 10239999 levels ~10240000 states ~73239987 transitions
pins2lts-seq, 277.889: explored 20479999 levels ~20480000 states ~142318907 transitions
pins2lts-seq, 599.129: explored 40959999 levels ~40960000 states ~290943371 transitions
pins2lts-seq, 1181.961: explored 81919999 levels ~81920000 states ~587888116 transitions
pins2lts-seq, 1269.110, ** error **: out of memory trying to resize to 4294967296
null
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-seq, ./gal.so, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
Status WARNING: fr.lip6.move.gal code=255 pins2lts-seq, 0.001: Registering PINS so language module
pins2lts-seq, 0.001: Loading model from ./gal.so
pins2lts-seq, 0.011: library has no initializer
pins2lts-seq, 0.011: loading model GAL
pins2lts-seq, 0.012: completed loading model GAL
pins2lts-seq, 0.012: Initializing POR dependencies: labels 17, guards 16
pins2lts-seq, 0.012: There are 17 state labels and 1 edge labels
pins2lts-seq, 0.012: State length is 14, there are 16 groups
pins2lts-seq, 0.012: Running dfs search strategy
pins2lts-seq, 0.012: Using a tree for state storage
pins2lts-seq, 0.012: Visible groups: 0 / 16, labels: 0 / 17
pins2lts-seq, 0.012: POR cycle proviso: none
pins2lts-seq, 0.152: explored 10000 levels ~10000 states ~89974 transitions
pins2lts-seq, 0.258: explored 20000 levels ~20000 states ~179974 transitions
pins2lts-seq, 0.495: explored 40000 levels ~40000 states ~359974 transitions
pins2lts-seq, 1.002: explored 80000 levels ~80000 states ~719974 transitions
pins2lts-seq, 2.112: explored 160000 levels ~160000 states ~1379976 transitions
pins2lts-seq, 4.366: explored 320000 levels ~320000 states ~2759975 transitions
pins2lts-seq, 9.211: explored 640000 levels ~640000 states ~5399991 transitions
pins2lts-seq, 15.887: explored 1280000 levels ~1280000 states ~9379984 transitions
pins2lts-seq, 31.929: explored 2560000 levels ~2560000 states ~19059970 transitions
pins2lts-seq, 64.455: explored 5119999 levels ~5120000 states ~35479925 transitions
pins2lts-seq, 139.579: explored 10239999 levels ~10240000 states ~73239987 transitions
pins2lts-seq, 277.889: explored 20479999 levels ~20480000 states ~142318907 transitions
pins2lts-seq, 599.129: explored 40959999 levels ~40960000 states ~290943371 transitions
pins2lts-seq, 1181.961: explored 81919999 levels ~81920000 states ~587888116 transitions
pins2lts-seq, 1269.110, ** error **: out of memory trying to resize to 4294967296
null
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:130)
at java.lang.Thread.run(Thread.java:748)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="CircadianClock-PT-100000"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/CircadianClock-PT-100000.tgz
mv CircadianClock-PT-100000 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool itstools"
echo " Input is CircadianClock-PT-100000, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r010-csrt-149436129900611"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;