Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool itstools
Input is Angiogenesis-PT-01, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r010-csrt-149436129300117
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-0
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-1
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-15
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-2
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-3
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-4
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-5
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-6
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-7
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-8
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1496247109881

FORMULA Angiogenesis-PT-01-ReachabilityFireability-13 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-12 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-8 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-4 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-3 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-2 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE

Using solver YICES2 to compute partial order matrices.
Built C files in :
/home/mcc/execution
its-reach command run as :

/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201705302212/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityFireability.pnml.gal -t CGAL -reachable-file ReachabilityFireability.prop --nowitness
Loading property file ReachabilityFireability.prop.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis\_PT\_01\_flat\_flat,110,0.029206,5588,2,284,5,1209,6,0,220,974,0
Total reachable state count : 110

Verifying 10 reachability properties.
Reachability property Angiogenesis-PT-01-ReachabilityFireability-0 is true.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-0 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-0,1,0.030156,5664,2,40,6,1209,7,0,224,974,0
Invariant property Angiogenesis-PT-01-ReachabilityFireability-1 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-1 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-1,3,0.031765,5776,2,55,7,1209,8,0,242,974,0
Invariant property Angiogenesis-PT-01-ReachabilityFireability-5 is true.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-5 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-5,0,0.032836,6000,1,0,7,1209,9,0,251,974,0
Invariant property Angiogenesis-PT-01-ReachabilityFireability-6 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-6 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-6,2,0.033064,6000,2,42,8,1209,10,0,252,974,0
Invariant property Angiogenesis-PT-01-ReachabilityFireability-7 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-7 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-7,2,0.03338,6000,2,42,9,1209,11,0,253,974,0
Reachability property Angiogenesis-PT-01-ReachabilityFireability-9 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-9 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING
No reachable states exhibit your property : Angiogenesis-PT-01-ReachabilityFireability-9

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-9,0,0.034232,6000,1,0,9,1209,12,0,257,974,0
Invariant property Angiogenesis-PT-01-ReachabilityFireability-10 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-10,2,0.034601,6000,2,42,10,1209,13,0,260,974,0
Invariant property Angiogenesis-PT-01-ReachabilityFireability-11 is true.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-11 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-11,0,0.036249,6000,1,0,10,1209,14,0,285,974,0
Invariant property Angiogenesis-PT-01-ReachabilityFireability-14 is true.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-14 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-14,0,0.037393,6000,1,0,10,1209,15,0,292,974,0
Invariant property Angiogenesis-PT-01-ReachabilityFireability-15 is true.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-15 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-15,0,0.039178,6000,1,0,10,1209,16,0,313,974,0
Exit code :0

BK_STOP 1496247112297

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ java -Dosgi.requiredJavaVersion=1.6 -Xss8m -Xms40m -Xmx8192m -Declipse.pde.launch=true -Dfile.encoding=UTF-8 -classpath /home/mcc/BenchKit//eclipse/plugins/org.eclipse.equinox.launcher_1.3.201.v20161025-1711.jar org.eclipse.equinox.launcher.Main -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -nl en_US -consoleLog -pnfolder /home/mcc/execution -examination ReachabilityFireability -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
May 31, 2017 4:11:51 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 31, 2017 4:11:51 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 50 ms
May 31, 2017 4:11:51 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 31, 2017 4:11:51 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 31, 2017 4:11:51 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Invariant property Angiogenesis-PT-01-ReachabilityFireability-2 is trivially false : it is not verified in initial state.
May 31, 2017 4:11:51 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property Angiogenesis-PT-01-ReachabilityFireability-3 is trivially true : it is verified in initial state.
May 31, 2017 4:11:51 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Invariant property Angiogenesis-PT-01-ReachabilityFireability-4 is trivially false : it is not verified in initial state.
May 31, 2017 4:11:51 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property Angiogenesis-PT-01-ReachabilityFireability-8 is trivially true : it is verified in initial state.
May 31, 2017 4:11:51 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property Angiogenesis-PT-01-ReachabilityFireability-12 is trivially true : it is verified in initial state.
May 31, 2017 4:11:51 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property Angiogenesis-PT-01-ReachabilityFireability-13 is trivially true : it is verified in initial state.
May 31, 2017 4:11:51 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 36 ms
May 31, 2017 4:11:51 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 11 ms
May 31, 2017 4:11:51 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityFireability.pnml.gal : 8 ms
May 31, 2017 4:11:51 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/ReachabilityFireability.prop : 0 ms
May 31, 2017 4:11:51 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 38 ms
May 31, 2017 4:11:51 PM fr.lip6.move.gal.itstools.Runner runTool
INFO: Standard error output from running tool CommandLine [args=[/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201705302212/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityFireability.pnml.gal, -t, CGAL, -reachable-file, ReachabilityFireability.prop, --nowitness], workingDir=/home/mcc/execution]
Read property : Angiogenesis-PT-01-ReachabilityFireability-0 with value :((KdStarGStarP3kStar>=1)&&(Pip2>=1))
Read property : Angiogenesis-PT-01-ReachabilityFireability-1 with value :((!((((PtP2>=1)&&(Pip3>=1))||(PtP3>=1))&&(((PtP2>=1)&&(Pip3>=1))||((Pip3>=1)&&(Akt>=1)))))&&((GStarPgP3>=1)||(((KdStarGStarP3>=1)||((Gab1>=1)&&(KdStar>=1)))&&(!((KdStarGStarPgStar>=1)&&(Pip2>=1))))))
Read property : Angiogenesis-PT-01-ReachabilityFireability-5 with value :(((!((KdStarPgStar>=1)&&(Pip2>=1)))&&((!((KdStarGStar>=1)&&(Pg>=1)))||(!(DAGE>=1))))||(!((KdStarGStarP3>=1)&&(Pg>=1))))
Read property : Angiogenesis-PT-01-ReachabilityFireability-6 with value :(!(GStarPgP3>=1))
Read property : Angiogenesis-PT-01-ReachabilityFireability-7 with value :(!(KdStarGStarP3kP3>=1))
Read property : Angiogenesis-PT-01-ReachabilityFireability-9 with value :(((!(KdStarGStarPgStarP3P2>=1))&&((GP3>=1)&&(KdStar>=1)))||(KdStarGStarPgStarP3P2>=1))
Read property : Angiogenesis-PT-01-ReachabilityFireability-10 with value :(!((!(KdStarGStarPgStarP2>=1))&&(DAGE>=1)))
Read property : Angiogenesis-PT-01-ReachabilityFireability-11 with value :(((!(((KdStarPgStar>=1)&&(Pip2>=1))&&(AktP3>=1)))||((GStarP3>=1)&&(P3k>=1)))||(((((GStarPgP3>=1)&&(KdStar>=1))||(DAGE>=1))&&((KdStarGStar>=1)&&(Pg>=1)))||((((KdStarGStarP3kStar>=1)&&(Pip2>=1))&&((GP3>=1)&&(KdStar>=1)))&&(KdStarPgStarP2>=1))))
Read property : Angiogenesis-PT-01-ReachabilityFireability-14 with value :(!(((Gab1>=1)&&(Pip3>=1))&&((!(KdStarGStarP3k>=1))||((KdStarGStarP3kP3>=1)||((Gab1>=1)&&(Pip3>=1))))))
Read property : Angiogenesis-PT-01-ReachabilityFireability-15 with value :((((!((PtP2>=1)&&(Pip3>=1)))&&((KdStarGStarP3>=1)&&(Pg>=1)))&&((KdStarGStarPgStarP2>=1)&&(KdStarPgStarP2>=1)))||(((!((Gab1>=1)&&(Pip3>=1)))||((KdStarGStarPgStarP2>=1)||((Pip3>=1)&&(Akt>=1))))||(((KdStarPg>=1)||(KdStarGStarP3kP3>=1))||(((KdStarGStar>=1)&&(Pg>=1))&&(PtP3>=1)))))

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-01, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r010-csrt-149436129300117"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;