Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool itstools
Input is Angiogenesis-PT-01, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r010-csrt-149436129300114
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-0
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-1
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-10
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-11
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-12
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-13
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-14
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-15
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-2
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-3
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-4
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-5
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-6
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-7
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-8
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-9

=== Now, execution of the tool begins

BK_START 1496247070836


Using solver YICES2 to compute partial order matrices.
Built C files in :
/home/mcc/execution
its-ltl command run as :

/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201705302212/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !(("KdStarGStarPgP3>=1"))
Formula 0 simplified : !"KdStarGStarPgP3>=1"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
6 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.103928,24660,1,0,57,6267,140,39,1405,4129,136
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-0 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 1 : !((G((("Pip3>=1")&&("Akt>=1"))U(G(G("KdStarGStarPgStarP2>=1"))))))
Formula 1 simplified : !G(("Akt>=1" & "Pip3>=1") U G"KdStarGStarPgStarP2>=1")
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.107367,25776,1,0,57,6267,174,39,1431,4131,145
an accepting run exists (use option '-e' to print it)
Formula 1 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-1 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 2 : !(("KdStarG>=1"))
Formula 2 simplified : !"KdStarG>=1"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.107723,25784,1,0,57,6267,177,39,1432,4132,147
an accepting run exists (use option '-e' to print it)
Formula 2 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-2 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 3 : !((X("KdStarGStarPgStarP3P2>=1")))
Formula 3 simplified : !X"KdStarGStarPgStarP3P2>=1"
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.109092,25784,1,0,58,6304,180,40,1434,4179,154
an accepting run exists (use option '-e' to print it)
Formula 3 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-3 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 4 : !((G(X(F(("DAGE>=1")U(("KdStarPgStar>=1")&&("Pip2>=1")))))))
Formula 4 simplified : !GXF("DAGE>=1" U ("KdStarPgStar>=1" & "Pip2>=1"))
3 unique states visited
3 strongly connected components in search stack
4 transitions explored
3 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.112265,26044,1,0,61,6535,194,44,1439,4566,172
an accepting run exists (use option '-e' to print it)
Formula 4 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-4 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 5 : !((F(G(X(G(X("GStarP3kP3>=1")))))))
Formula 5 simplified : !FGXGX"GStarP3kP3>=1"
4 unique states visited
3 strongly connected components in search stack
6 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.114681,26456,1,0,62,6592,199,45,1440,4658,178
an accepting run exists (use option '-e' to print it)
Formula 5 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-5 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 6 : !((("GStarPgP3>=1")&&("KdStar>=1")))
Formula 6 simplified : !("GStarPgP3>=1" & "KdStar>=1")
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.115148,26456,1,0,62,6592,207,45,1445,4659,180
an accepting run exists (use option '-e' to print it)
Formula 6 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-6 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 7 : !((G((F(G(("Pip3>=1")&&("Akt>=1"))))U(X(X(("KdStarGStar>=1")&&("P3k>=1")))))))
Formula 7 simplified : !G(FG("Akt>=1" & "Pip3>=1") U XX("KdStarGStar>=1" & "P3k>=1"))
5 unique states visited
5 strongly connected components in search stack
5 transitions explored
5 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.122779,28772,1,0,65,7173,231,49,1453,5455,201
an accepting run exists (use option '-e' to print it)
Formula 7 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-7 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 8 : !((F(X(X(X(X(("Pip2>=1")&&("Pten>=1"))))))))
Formula 8 simplified : !FXXXX("Pip2>=1" & "Pten>=1")
6 unique states visited
6 strongly connected components in search stack
6 transitions explored
6 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.129653,28952,1,0,81,8023,243,64,1457,6743,247
an accepting run exists (use option '-e' to print it)
Formula 8 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-8 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 9 : !((G((F(G("KdStarGP3>=1")))U(X("PtP2>=1")))))
Formula 9 simplified : !G(FG"KdStarGP3>=1" U X"PtP2>=1")
4 unique states visited
4 strongly connected components in search stack
5 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.133068,29464,1,0,82,8210,259,65,1460,6975,262
an accepting run exists (use option '-e' to print it)
Formula 9 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-9 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 10 : !((F("KdStarG>=1")))
Formula 10 simplified : !F"KdStarG>=1"
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.134694,29468,1,0,95,8337,265,78,1460,7427,299
an accepting run exists (use option '-e' to print it)
Formula 10 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 11 : !(("KdStarGStarP3k>=1"))
Formula 11 simplified : !"KdStarGStarP3k>=1"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.134985,29468,1,0,95,8337,268,78,1461,7427,301
an accepting run exists (use option '-e' to print it)
Formula 11 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 12 : !(("KdStarG>=1"))
Formula 12 simplified : !"KdStarG>=1"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.135237,29508,1,0,95,8337,268,78,1461,7427,301
an accepting run exists (use option '-e' to print it)
Formula 12 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 13 : !((G(F(F(F(G(("Gab1>=1")&&("Pip3>=1"))))))))
Formula 13 simplified : !GFG("Gab1>=1" & "Pip3>=1")
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
2 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.155286,29792,1,0,113,10755,286,122,1466,12580,442
an accepting run exists (use option '-e' to print it)
Formula 13 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 14 : !((G(G(F(G(X("PtP3>=1")))))))
Formula 14 simplified : !GFGX"PtP3>=1"
2 unique states visited
1 strongly connected components in search stack
3 transitions explored
2 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.156827,29892,1,0,114,10867,291,123,1467,12745,448
an accepting run exists (use option '-e' to print it)
Formula 14 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 15 : !((X(F(("Gab1>=1")&&("Pip3>=1")))))
Formula 15 simplified : !XF("Gab1>=1" & "Pip3>=1")
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.157487,30132,1,0,114,10867,297,124,1467,12775,455
an accepting run exists (use option '-e' to print it)
Formula 15 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 64 rows 39 cols
Exit code :0

BK_STOP 1496247073555

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ java -Dosgi.requiredJavaVersion=1.6 -Xss8m -Xms40m -Xmx8192m -Declipse.pde.launch=true -Dfile.encoding=UTF-8 -classpath /home/mcc/BenchKit//eclipse/plugins/org.eclipse.equinox.launcher_1.3.201.v20161025-1711.jar org.eclipse.equinox.launcher.Main -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -nl en_US -consoleLog -pnfolder /home/mcc/execution -examination LTLFireability -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
May 31, 2017 4:11:12 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 31, 2017 4:11:12 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 50 ms
May 31, 2017 4:11:12 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 31, 2017 4:11:12 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 31, 2017 4:11:12 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 41 ms
May 31, 2017 4:11:12 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 8 ms
May 31, 2017 4:11:12 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 1 ms
May 31, 2017 4:11:13 PM fr.lip6.move.gal.itstools.Runner runTool
INFO: Standard error output from running tool CommandLine [args=[/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201705302212/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]
Reverse transition relation is NOT exact ! Due to transitions k2, k55, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :14/48/2/64
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states
Computing Next relation with stutter on 4 deadlock states

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-01, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r010-csrt-149436129300114"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;