Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is Angiogenesis-PT-15, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r001-csrt-149436061100119
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-0
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-1
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-10
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-11
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-12
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-13
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-14
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-15
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-2
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-3
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-4
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-5
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-6
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-7
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-8
FORMULA_NAME Angiogenesis-PT-15-UpperBounds-9

=== Now, execution of the tool begins

BK_START 1494448679672

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=UpperBounds.xml --memory=6

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.001sec

init dd package: 0m 1.460sec

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 4.609sec


RS generation: 14m44.092sec


-> reachability set: #nodes 642778 (6.4e+05) #states 1,115,538,966,669,107 (15)



starting MCC model checker
--------------------------

checking: place_bound(KdStarGStarP3k)
normalized: place_bound(KdStarGStarP3k)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-0 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(Enz)
normalized: place_bound(Enz)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-1 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(Gab1)
normalized: place_bound(Gab1)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-2 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(Gab1)
normalized: place_bound(Gab1)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-3 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(Pg)
normalized: place_bound(Pg)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-4 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(KdStarGStarPgStarP3)
normalized: place_bound(KdStarGStarPgStarP3)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-5 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(DAGE)
normalized: place_bound(DAGE)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-6 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(KdStarGStarP3kP3)
normalized: place_bound(KdStarGStarP3kP3)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-7 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(KdStarGStarPgStarP3P2)
normalized: place_bound(KdStarGStarPgStarP3P2)

-> the formula is 7

FORMULA Angiogenesis-PT-15-UpperBounds-8 7 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(GStarP3)
normalized: place_bound(GStarP3)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-9 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(KdStarG)
normalized: place_bound(KdStarG)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-10 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(KdStarGStarP3kStarP3P2)
normalized: place_bound(KdStarGStarP3kStarP3P2)

-> the formula is 7

FORMULA Angiogenesis-PT-15-UpperBounds-11 7 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(KdStarG)
normalized: place_bound(KdStarG)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-12 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(P3k)
normalized: place_bound(P3k)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-13 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(KdStarGStar)
normalized: place_bound(KdStarGStar)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-14 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: place_bound(Pip3)
normalized: place_bound(Pip3)

-> the formula is 15

FORMULA Angiogenesis-PT-15-UpperBounds-15 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

totally nodes used: 16126223 (1.6e+07)
number of garbage collections: 0
fire ops cache: hits/miss/sum: 1013322451 410813482 1424135933
used/not used/entry size/cache size: 63530370 3578494 16 1024MB
basic ops cache: hits/miss/sum: 1523537 699219 2222756
used/not used/entry size/cache size: 1083357 15693859 12 192MB
unary ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 8 128MB
abstract ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 12 192MB
state nr cache: hits/miss/sum: 1709195 656043 2365238
used/not used/entry size/cache size: 619525 7769083 32 256MB
max state cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 32 256MB
uniqueHash elements/entry size/size: 67108864 4 256MB
0 54816905
1 10402643
2 1420769
3 244703
4 54169
5 10794
6 21806
7 19562
8 29406
9 29478
>= 10 58629

Total processing time: 15m 1.868sec


BK_STOP 1494449581709

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok

ptnet_zbdd.cc:255: Boundedness exception: net is not 1-bounded!

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:20212 (315), effective:1561 (24)

initing FirstDep: 0m 0.001sec

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is Angiogenesis-PT-15, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r001-csrt-149436061100119"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;