Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_Angiogenesis-PT-05, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r173kn-ebro-146433144700027
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-0
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-1
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-15
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-2
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-3
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-4
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-5
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-6
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-7
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-8
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1464784848926


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_05
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.235sec


RS generation: 0m 0.877sec


-> reachability set: #nodes 10921 (1.1e+04) #states 42,734,935 (7)



starting MCC model checker
--------------------------

checking: AG [~ [IS_FIREABLE [k23]]]
normalized: ~ [E [true U IS_FIREABLE [k23]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.727sec

checking: AG [~ [IS_FIREABLE [k49]]]
normalized: ~ [E [true U IS_FIREABLE [k49]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.907sec

checking: EF [IS_FIREABLE [k15]]
normalized: E [true U IS_FIREABLE [k15]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.021sec

checking: AG [~ [~ [[~ [IS_FIREABLE [k34]] | ~ [IS_FIREABLE [k59]]]]]]
normalized: ~ [E [true U ~ [[~ [IS_FIREABLE [k59]] | ~ [IS_FIREABLE [k34]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.672sec

checking: EF [[IS_FIREABLE [k51] | IS_FIREABLE [k12]]]
normalized: E [true U [IS_FIREABLE [k51] | IS_FIREABLE [k12]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.394sec

checking: AG [[~ [IS_FIREABLE [k26]] | IS_FIREABLE [k3]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [k3] | ~ [IS_FIREABLE [k26]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.852sec

checking: EF [[[IS_FIREABLE [k61] | IS_FIREABLE [k52]] & IS_FIREABLE [k21]]]
normalized: E [true U [IS_FIREABLE [k21] & [IS_FIREABLE [k61] | IS_FIREABLE [k52]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.406sec

checking: EF [[~ [~ [IS_FIREABLE [k4]]] & ~ [[[IS_FIREABLE [k56] | IS_FIREABLE [k15]] & ~ [IS_FIREABLE [k35]]]]]]
normalized: E [true U [IS_FIREABLE [k4] & ~ [[~ [IS_FIREABLE [k35]] & [IS_FIREABLE [k56] | IS_FIREABLE [k15]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.436sec

checking: EF [~ [[~ [[IS_FIREABLE [k9] & IS_FIREABLE [k57]]] | ~ [[IS_FIREABLE [k52] & IS_FIREABLE [k38]]]]]]
normalized: E [true U ~ [[~ [[IS_FIREABLE [k9] & IS_FIREABLE [k57]]] | ~ [[IS_FIREABLE [k52] & IS_FIREABLE [k38]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.926sec

checking: AG [[~ [[[IS_FIREABLE [k58] | IS_FIREABLE [k21]] & [IS_FIREABLE [k19] & IS_FIREABLE [k54]]]] | IS_FIREABLE [k40]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [k40] | ~ [[[IS_FIREABLE [k58] | IS_FIREABLE [k21]] & [IS_FIREABLE [k19] & IS_FIREABLE [k54]]]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.152sec

checking: AG [[[~ [[IS_FIREABLE [k51] & IS_FIREABLE [k51]]] | [IS_FIREABLE [k49] & ~ [IS_FIREABLE [k57]]]] | IS_FIREABLE [k20]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [k20] | [[IS_FIREABLE [k49] & ~ [IS_FIREABLE [k57]]] | ~ [[IS_FIREABLE [k51] & IS_FIREABLE [k51]]]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.735sec

checking: AG [~ [[[[IS_FIREABLE [k10] & IS_FIREABLE [k46]] | IS_FIREABLE [k49]] & [IS_FIREABLE [k47] & IS_FIREABLE [k12]]]]]
normalized: ~ [E [true U [[IS_FIREABLE [k47] & IS_FIREABLE [k12]] & [IS_FIREABLE [k49] | [IS_FIREABLE [k10] & IS_FIREABLE [k46]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.446sec

checking: AG [[[IS_FIREABLE [k34] | IS_FIREABLE [k44]] | [~ [[IS_FIREABLE [k58] & IS_FIREABLE [k61]]] | [~ [IS_FIREABLE [k61]] | ~ [IS_FIREABLE [k2]]]]]]
normalized: ~ [E [true U ~ [[[[~ [IS_FIREABLE [k2]] | ~ [IS_FIREABLE [k61]]] | ~ [[IS_FIREABLE [k58] & IS_FIREABLE [k61]]]] | [IS_FIREABLE [k34] | IS_FIREABLE [k44]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.909sec

checking: EF [[[~ [~ [IS_FIREABLE [k46]]] & [IS_FIREABLE [k31] | [IS_FIREABLE [k20] | IS_FIREABLE [k59]]]] & [~ [~ [IS_FIREABLE [k55]]] | IS_FIREABLE [k35]]]]
normalized: E [true U [[IS_FIREABLE [k55] | IS_FIREABLE [k35]] & [IS_FIREABLE [k46] & [IS_FIREABLE [k31] | [IS_FIREABLE [k20] | IS_FIREABLE [k59]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.672sec

checking: AG [[IS_FIREABLE [k51] | [~ [[IS_FIREABLE [k20] & IS_FIREABLE [k29]]] | [[IS_FIREABLE [k22] & IS_FIREABLE [k32]] & [IS_FIREABLE [k37] | IS_FIREABLE [k24]]]]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [k51] | [[[IS_FIREABLE [k37] | IS_FIREABLE [k24]] & [IS_FIREABLE [k22] & IS_FIREABLE [k32]]] | ~ [[IS_FIREABLE [k20] & IS_FIREABLE [k29]]]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.818sec

checking: AG [[[[~ [IS_FIREABLE [k44]] | [IS_FIREABLE [k27] | IS_FIREABLE [k45]]] | [~ [IS_FIREABLE [k60]] | ~ [IS_FIREABLE [k14]]]] | [[[IS_FIREABLE [k34] & IS_FIREABLE [k4]] | IS_FIREABLE [k57]] | ~ [[IS_FIREABLE [k62] | IS_FIREABLE [k7]]]]]]
normalized: ~ [E [true U ~ [[[~ [[IS_FIREABLE [k62] | IS_FIREABLE [k7]]] | [IS_FIREABLE [k57] | [IS_FIREABLE [k34] & IS_FIREABLE [k4]]]] | [[~ [IS_FIREABLE [k14]] | ~ [IS_FIREABLE [k60]]] | [[IS_FIREABLE [k27] | IS_FIREABLE [k45]] | ~ [IS_FIREABLE [k44]]]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.190sec


Total processing time: 0m27.537sec


BK_STOP 1464784876524

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

1096 1888 3952 10799 10915
iterations count:5829 (91), effective:437 (6)

initing FirstDep: 0m 0.000sec

12759
iterations count:1077 (16), effective:72 (1)
11606
iterations count:1073 (16), effective:69 (1)
12759
iterations count:1077 (16), effective:72 (1)
10783 16255 13543
iterations count:3720 (58), effective:277 (4)
11382
iterations count:1057 (16), effective:70 (1)
13354 12617
iterations count:2046 (31), effective:147 (2)
11674 13418
iterations count:2379 (37), effective:183 (2)
11135
iterations count:1887 (29), effective:145 (2)
6738 10155 11967 13815
iterations count:4923 (76), effective:383 (5)
10431 10595 11763 13351 13231 12775
iterations count:6088 (95), effective:463 (7)
12718
iterations count:1148 (17), effective:85 (1)
9945 12128 11911
iterations count:3169 (49), effective:233 (3)
7836 13986 12909
iterations count:3287 (51), effective:249 (3)
7438 16788 17203 17535
iterations count:4952 (77), effective:377 (5)
11623 12273
iterations count:2186 (34), effective:165 (2)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-05"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-05.tgz
mv S_Angiogenesis-PT-05 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-05, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r173kn-ebro-146433144700027"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;