Model Checking Contest @ Petri Nets 2016
6th edition, Toruń, Poland, June 21, 2016
Execution of r009kn-ebro-146347679200060
Last Updated
June 30, 2016

About the Execution of PeCan for Angiogenesis-PT-25

Execution Summary
Max Memory
Used (MB)
Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
3288.910 94526.00 94927.00 104.50 ???????????????? normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
Generated by BenchKit 2-2979
Executing tool pecan
Input is Angiogenesis-PT-25, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r009kn-ebro-146347679200060

content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-0
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-1
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-10
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-11
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-12
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-13
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-14
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-15
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-2
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-3
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-4
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-5
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-6
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-7
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-8
FORMULA_NAME Angiogenesis-PT-25-LTLFireability-9

=== Now, execution of the tool begins

BK_START 1465417349385

Generated by BenchKit MCC2016
Executing tool pecan:
Test is Angiogenesis-PT-25, examination is LTLFireability

content from stdout:

START 1465417349
Xlib: extension "RANDR" missing on display ":99".
AngiogenesisPT25Too many heap sections: Increase MAXHINCR or MAX_HEAP_SECTS

at (wrapper managed-to-native) object.__icall_wrapper_mono_object_new_fast (intptr) <0xffffffff>
at PAT.Common.Classes.Expressions.Valuation.GetVariableClone () <0x000c3>
at PAT.PN.LTS.PNConfiguration.MakeOneMove () <0x000e4>
at PAT.Common.Classes.SemanticModels.LTS.Assertion.AssertionLTL.TarjanModelChecking () <0x00957>
at PAT.Common.Classes.SemanticModels.LTS.Assertion.AssertionLTL.RunVerification () <0x0020f>
at PAT.Common.Classes.ModuleInterface.AssertionBase.ModelChecking () <0x00012>
at PAT.Common.Classes.ModuleInterface.AssertionBase.InternalStart () <0x00077>
at PAT.Console.Program.RunOneSpec (string,string,System.IO.StreamWriter,System.Text.StringBuilder,bool,bool,int,int,string) <0x00187>
at PAT.Console.Program.Main (string[]) <0x0152f>
at (wrapper runtime-invoke) .runtime_invoke_void_object (object,intptr,intptr,intptr) <0xffffffff>

Native stacktrace:

/usr/bin/mono() [0x80e16fc]
/lib/i386-linux-gnu/ [0xb759520f]
/lib/i386-linux-gnu/ [0xb7598855]
/usr/bin/mono() [0x8223e76]
/usr/bin/mono() [0x821cb24]
/usr/bin/mono() [0x821cd3a]
/usr/bin/mono() [0x821cff8]
/usr/bin/mono() [0x821d13a]
/usr/bin/mono() [0x821fb39]
/usr/bin/mono() [0x8220890]
/usr/bin/mono() [0x8226838]
/usr/bin/mono(mono_object_new_fast+0x18) [0x81a1d18]
/usr/bin/mono() [0x8064c2c]

Debug info from gdb:

Could not attach to process. If your uid matches the uid of the target
process, check the setting of /proc/sys/kernel/yama/ptrace_scope, or try
again as the root user. For more details, see /etc/sysctl.d/10-ptrace.conf
ptrace: Operation not permitted.
No threads.

Got a SIGABRT while executing native code. This usually indicates
a fatal error in the mono runtime or one of the native libraries
used by your application.

Aborted (core dumped)
FORMULA Angiogenesis-PT-25-LTLFireability-0
FORMULA Angiogenesis-PT-25-LTLFireability-1
FORMULA Angiogenesis-PT-25-LTLFireability-2
FORMULA Angiogenesis-PT-25-LTLFireability-3
FORMULA Angiogenesis-PT-25-LTLFireability-4
FORMULA Angiogenesis-PT-25-LTLFireability-5
FORMULA Angiogenesis-PT-25-LTLFireability-6
FORMULA Angiogenesis-PT-25-LTLFireability-7
FORMULA Angiogenesis-PT-25-LTLFireability-8
FORMULA Angiogenesis-PT-25-LTLFireability-9
FORMULA Angiogenesis-PT-25-LTLFireability-10
FORMULA Angiogenesis-PT-25-LTLFireability-11
FORMULA Angiogenesis-PT-25-LTLFireability-12
FORMULA Angiogenesis-PT-25-LTLFireability-13
FORMULA Angiogenesis-PT-25-LTLFireability-14
FORMULA Angiogenesis-PT-25-LTLFireability-15
STOP 1465417443

content from stderr:

content from /users/gast00/fkordon/BK_RESULTS/OUTPUTS/BenchKit_head_log_file.1826:

BK_STOP 1465417443911

content from stderr:

cat: /users/gast00/fkordon/BK_RESULTS/OUTPUTS/STDERR: No such file or directory

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="pecan"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool pecan"
echo " Input is Angiogenesis-PT-25, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r009kn-ebro-146347679200060"
echo "====================================================================="
echo "--------------------"
echo "content from stdout:"
echo "=== Data for post analysis generated by BenchKit (invocation template)"
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo "no data necessary for post analysis"
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
echo "=== Now, execution of the tool begins"
echo -n "BK_START "
date -u +%s%3N
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/ 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo "--------------------"
echo "content from stderr:"
cat STDERR ;