Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..........
=====================================================================
Generated by BenchKit 2-2979
Executing tool tapaalSEQ
Input is GPPP-PT-C0001N0000100000, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r222su-smll-146468030100486
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C0001N0000100000-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1465093916904

---> tapaalSEQ --- TAPAAL Sequential

*******************************************************
* TAPAAL Sequential verifying ReachabilityFireability *
*******************************************************

timeout 5 verifypn -n -s OverApprox -x 1 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-0: EF ( (true and "Pyr" >= 1 and "NADH" >= 1) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 2 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-1: EF ( (true and "ATP" >= 7 and "Lac" >= 7) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 3 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-2: EF ( (((true and "Ru5P" >= 1 and "a1" >= 2) and (true and "_2PG" >= 1)) and ((true and "ATP" >= 1 and "Gluc" >= 1) or not((true and "GAP" >= 1)))) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 5 verifypn -n -s OverApprox -x 4 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-3: EF ( (((((true and "Ru5P" >= 1 and "a2" >= 1) or (true and "PEP" >= 1 and "ADP" >= 1)) or ((true and "Xu5P" >= 1 and "R5P" >= 1) or (true and "GAP" >= 1))) and (true and "G6P" >= 1 and "b1" >= 3)) and ((((true and "_2PG" >= 1) or (true and "Ru5P" >= 1 and "a1" >= 2)) or ((true and "ATP" >= 7 and "Lac" >= 7) and (true and "Ru5P" >= 1 and "a1" >= 2))) or (((true and "DHAP" >= 1) or (true and "FBP" >= 1)) or ((true and "_2PG" >= 1) and (true and "Ru5P" >= 1 and "a1" >= 2))))) )

timeout 5 verifypn -n -s OverApprox -x 5 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-4: EF ( (true and "ATP" >= 7 and "Lac" >= 7) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 6 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-5: EF ( ((true and "PEP" >= 1 and "ADP" >= 1) and not(not(((true and "Xu5P" >= 1 and "R5P" >= 1) or (true and "Ru5P" >= 1 and "a1" >= 2))))) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 5 verifypn -n -s OverApprox -x 7 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-6: not EF not ( (not(not(not((true and "ATP" >= 1 and "Gluc" >= 1)))) or not((((true and "ATP" >= 1 and "Gluc" >= 1) and (true and "S7P" >= 1 and "GAP" >= 1 and "c1" >= 7)) and ((true and "PEP" >= 1 and "ADP" >= 1) or (true and "_3PG" >= 1))))) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 8 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-7: EF ( not(((((true and "ATP" >= 1 and "Gluc" >= 1) and (true and "DHAP" >= 1)) or ((true and "FBP" >= 1) and (true and "start" >= 1))) or (not((true and "ATP" >= 7 and "Lac" >= 7)) or ((true and "DHAP" >= 1) and (true and "_2PG" >= 1))))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 9 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-8: EF ( (((((true and "GAP" >= 1 and "NADplus" >= 1 and "Pi" >= 1 and "c2" >= 1) and (true and "S7P" >= 1 and "GAP" >= 1 and "c1" >= 7)) and not((true and "ATP" >= 1 and "Gluc" >= 1))) and (true and "GSSG" >= 1 and "NADPH" >= 1)) and (not(((true and "start" >= 1) and (true and "E4P" >= 1 and "Xu5P" >= 1))) and ((true and "ADP" >= 1 and "_1_3_BPG" >= 1) and ((true and "Xu5P" >= 1 and "R5P" >= 1) or (true and "GSSG" >= 1 and "NADPH" >= 1))))) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 5 verifypn -n -s OverApprox -x 10 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-9: EF ( ((true and "start" >= 1) and (true and "NADPplus" >= 2 and "G6P" >= 1 and "b2" >= 1)) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 5 verifypn -n -s OverApprox -x 11 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-10: EF ( (((true and "DHAP" >= 1) and (((true and "G6P" >= 1 and "b1" >= 3) and (true and "Ru5P" >= 1 and "a1" >= 2)) or not((true and "_3PG" >= 1)))) and (true and "PEP" >= 1 and "ADP" >= 1)) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 12 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-11: EF ( (((((true and "ATP" >= 7 and "Lac" >= 7) or (true and "E4P" >= 1 and "Xu5P" >= 1)) and (true and "G6P" >= 1 and "b1" >= 3)) and not((true and "PEP" >= 1 and "ADP" >= 1))) and (not(((true and "_3PG" >= 1) and (true and "E4P" >= 1 and "Xu5P" >= 1))) or (not((true and "_2PG" >= 1)) or not((true and "DHAP" >= 1))))) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 5 verifypn -n -s OverApprox -x 13 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-12: EF ( (true and "Pyr" >= 1 and "NADH" >= 1) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 14 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-13: EF ( (true and "PEP" >= 1 and "ADP" >= 1) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 15 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-14: not EF not ( ((true and "GSSG" >= 1 and "NADPH" >= 1) or not((true and "PEP" >= 1 and "ADP" >= 1))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 16 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-15: EF ( ((true and "Xu5P" >= 1 and "R5P" >= 1) and (not(not((true and "Ru5P" >= 1 and "a2" >= 1))) and (true and "ADP" >= 1 and "_1_3_BPG" >= 1))) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 40 verifypn -n -d -r 1 -x 1 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-0: EF ( (true and "Pyr" >= 1 and "NADH" >= 1) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 2 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-1: EF ( (true and "ATP" >= 7 and "Lac" >= 7) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 4 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-3: EF ( (((((true and "Ru5P" >= 1 and "a2" >= 1) or (true and "PEP" >= 1 and "ADP" >= 1)) or ((true and "Xu5P" >= 1 and "R5P" >= 1) or (true and "GAP" >= 1))) and (true and "G6P" >= 1 and "b1" >= 3)) and ((((true and "_2PG" >= 1) or (true and "Ru5P" >= 1 and "a1" >= 2)) or ((true and "ATP" >= 7 and "Lac" >= 7) and (true and "Ru5P" >= 1 and "a1" >= 2))) or (((true and "DHAP" >= 1) or (true and "FBP" >= 1)) or ((true and "_2PG" >= 1) and (true and "Ru5P" >= 1 and "a1" >= 2))))) )

timeout 40 verifypn -n -d -r 1 -x 5 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-4: EF ( (true and "ATP" >= 7 and "Lac" >= 7) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 8 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-7: EF ( not(((((true and "ATP" >= 1 and "Gluc" >= 1) and (true and "DHAP" >= 1)) or ((true and "FBP" >= 1) and (true and "start" >= 1))) or (not((true and "ATP" >= 7 and "Lac" >= 7)) or ((true and "DHAP" >= 1) and (true and "_2PG" >= 1))))) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 11 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-10: EF ( (((true and "DHAP" >= 1) and (((true and "G6P" >= 1 and "b1" >= 3) and (true and "Ru5P" >= 1 and "a1" >= 2)) or not((true and "_3PG" >= 1)))) and (true and "PEP" >= 1 and "ADP" >= 1)) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 13 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-12: EF ( (true and "Pyr" >= 1 and "NADH" >= 1) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 14 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-13: EF ( (true and "PEP" >= 1 and "ADP" >= 1) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 15 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-14: not EF not ( ((true and "GSSG" >= 1 and "NADPH" >= 1) or not((true and "PEP" >= 1 and "ADP" >= 1))) )

FORMULA GPPP-PT-C0001N0000100000-ReachabilityFireability-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 30 verifypn -n -d -r 1 -s BFS -x 4 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-3: EF ( (((((true and "Ru5P" >= 1 and "a2" >= 1) or (true and "PEP" >= 1 and "ADP" >= 1)) or ((true and "Xu5P" >= 1 and "R5P" >= 1) or (true and "GAP" >= 1))) and (true and "G6P" >= 1 and "b1" >= 3)) and ((((true and "_2PG" >= 1) or (true and "Ru5P" >= 1 and "a1" >= 2)) or ((true and "ATP" >= 7 and "Lac" >= 7) and (true and "Ru5P" >= 1 and "a1" >= 2))) or (((true and "DHAP" >= 1) or (true and "FBP" >= 1)) or ((true and "_2PG" >= 1) and (true and "Ru5P" >= 1 and "a1" >= 2))))) )

timeout 300 verifypn -n -d -r 1 -s DFS -x 4 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-3: EF ( (((((true and "Ru5P" >= 1 and "a2" >= 1) or (true and "PEP" >= 1 and "ADP" >= 1)) or ((true and "Xu5P" >= 1 and "R5P" >= 1) or (true and "GAP" >= 1))) and (true and "G6P" >= 1 and "b1" >= 3)) and ((((true and "_2PG" >= 1) or (true and "Ru5P" >= 1 and "a1" >= 2)) or ((true and "ATP" >= 7 and "Lac" >= 7) and (true and "Ru5P" >= 1 and "a1" >= 2))) or (((true and "DHAP" >= 1) or (true and "FBP" >= 1)) or ((true and "_2PG" >= 1) and (true and "Ru5P" >= 1 and "a1" >= 2))))) )

timeout 7200 verifypn -n -d -r 1 -s DFS -x 4 model.pnml ReachabilityFireability.xml
GPPP-PT-C0001N0000100000-ReachabilityFireability-3: EF ( (((((true and "Ru5P" >= 1 and "a2" >= 1) or (true and "PEP" >= 1 and "ADP" >= 1)) or ((true and "Xu5P" >= 1 and "R5P" >= 1) or (true and "GAP" >= 1))) and (true and "G6P" >= 1 and "b1" >= 3)) and ((((true and "_2PG" >= 1) or (true and "Ru5P" >= 1 and "a1" >= 2)) or ((true and "ATP" >= 7 and "Lac" >= 7) and (true and "Ru5P" >= 1 and "a1" >= 2))) or (((true and "DHAP" >= 1) or (true and "FBP" >= 1)) or ((true and "_2PG" >= 1) and (true and "Ru5P" >= 1 and "a1" >= 2))))) )


BK_STOP 1465094770957

--------------------
content from stderr:

terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
/home/mcc/BenchKit/tapaal.sh: line 42: 394 Aborted timeout $1 $VERIFYPN $3 "-x" $QUERY model.pnml $4

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000100000"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="tapaalSEQ"
export BK_RESULT_DIR="/root/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000100000.tgz
mv GPPP-PT-C0001N0000100000 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool tapaalSEQ"
echo " Input is GPPP-PT-C0001N0000100000, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r222su-smll-146468030100486"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;