Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
............
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is GPPP-PT-C1000N0000000100, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r221su-smll-146468027900576
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1465063482993


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: GPPP_PT_C1000N0000000100
(NrP: 33 NrTr: 22 NrArc: 83)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 3.828sec


RS generation: 1m 2.844sec


-> reachability set: #nodes 561475 (5.6e+05) #states 1,140,616,996,412,371 (15)



starting MCC model checker
--------------------------

checking: EF [IS_FIREABLE [Phosphoglycerate_mutase]]
normalized: E [true U IS_FIREABLE [Phosphoglycerate_mutase]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m50.783sec

checking: EF [IS_FIREABLE [Lactate_dehydrogenase]]
normalized: E [true U IS_FIREABLE [Lactate_dehydrogenase]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m51.664sec

checking: EF [IS_FIREABLE [remove]]
normalized: E [true U IS_FIREABLE [remove]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.808sec

checking: EF [~ [~ [IS_FIREABLE [Transketolase2]]]]
normalized: E [true U IS_FIREABLE [Transketolase2]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m18.643sec

checking: EF [IS_FIREABLE [remove]]
normalized: E [true U IS_FIREABLE [remove]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [IS_FIREABLE [remove]]
normalized: E [true U IS_FIREABLE [remove]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [IS_FIREABLE [Lactate_dehydrogenase]]
normalized: E [true U IS_FIREABLE [Lactate_dehydrogenase]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.238sec

checking: EF [[IS_FIREABLE [TIM_backward] & IS_FIREABLE [Transketolase2]]]
normalized: E [true U [IS_FIREABLE [TIM_backward] & IS_FIREABLE [Transketolase2]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m29.891sec

checking: AG [~ [[IS_FIREABLE [Phosphoglycerate_kinase] & ~ [~ [IS_FIREABLE [G6P_dehydrogenase]]]]]]
normalized: ~ [E [true U [IS_FIREABLE [Phosphoglycerate_kinase] & IS_FIREABLE [G6P_dehydrogenase]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m 6.978sec

checking: EF [[IS_FIREABLE [Pyruvate_kinase] & IS_FIREABLE [Glutathione_oxidation]]]
normalized: E [true U [IS_FIREABLE [Pyruvate_kinase] & IS_FIREABLE [Glutathione_oxidation]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m52.313sec

checking: AG [[~ [[IS_FIREABLE [GAP_dehydrogenase] | [IS_FIREABLE [remove] & IS_FIREABLE [Pyruvate_kinase]]]] | IS_FIREABLE [TIM_backward]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [TIM_backward] | ~ [[IS_FIREABLE [GAP_dehydrogenase] | [IS_FIREABLE [remove] & IS_FIREABLE [Pyruvate_kinase]]]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 3.825sec

checking: EF [[[IS_FIREABLE [Glutathione_oxidation] & [~ [IS_FIREABLE [TIM_forward]] & [IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [Aldolase]]]] & ~ [~ [~ [IS_FIREABLE [Phosphoglycerate_kinase]]]]]]
normalized: E [true U [~ [IS_FIREABLE [Phosphoglycerate_kinase]] & [IS_FIREABLE [Glutathione_oxidation] & [[IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [Aldolase]] & ~ [IS_FIREABLE [TIM_forward]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m12.249sec

checking: AG [[[~ [[IS_FIREABLE [GAP_dehydrogenase] | IS_FIREABLE [remove]]] | IS_FIREABLE [Pyruvate_kinase]] | [IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Phosphofructokinase]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [Pyruvate_kinase] | ~ [[IS_FIREABLE [GAP_dehydrogenase] | IS_FIREABLE [remove]]]] | [IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Phosphofructokinase]]]]]]


before gc: list nodes free: 618379

after gc: idd nodes used:1350575, unused:62649425; list nodes free:480003471
-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 8m 1.777sec

checking: AG [[IS_FIREABLE [TIM_backward] | [[[IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [Aldolase]] | ~ [IS_FIREABLE [TIM_forward]]] | [[IS_FIREABLE [Transketolase1] | IS_FIREABLE [Phosphofructokinase]] | ~ [IS_FIREABLE [generate]]]]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [TIM_backward] | [[[IS_FIREABLE [Transketolase1] | IS_FIREABLE [Phosphofructokinase]] | ~ [IS_FIREABLE [generate]]] | [~ [IS_FIREABLE [TIM_forward]] | [IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [Aldolase]]]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m14.852sec

checking: AG [[~ [[[IS_FIREABLE [Phosphoglycerate_mutase] | IS_FIREABLE [Enolase]] & ~ [IS_FIREABLE [GAP_dehydrogenase]]]] | [IS_FIREABLE [Aldolase] & [[IS_FIREABLE [Transketolase1] & IS_FIREABLE [generate]] & [IS_FIREABLE [TIM_forward] | IS_FIREABLE [Glutathione_reductose]]]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [Aldolase] & [[IS_FIREABLE [Transketolase1] & IS_FIREABLE [generate]] & [IS_FIREABLE [TIM_forward] | IS_FIREABLE [Glutathione_reductose]]]] | ~ [[~ [IS_FIREABLE [GAP_dehydrogenase]] & [IS_FIREABLE [Phosphoglycerate_mutase] | IS_FIREABLE [Enolase]]]]]]]]


before gc: list nodes free: 1251636

after gc: idd nodes used:1005884, unused:62994116; list nodes free:663463007
-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m37.995sec

checking: EF [[[[~ [IS_FIREABLE [remove]] | [IS_FIREABLE [Ru5P_isomerase] | IS_FIREABLE [Phosphoglycerate_kinase]]] | [~ [IS_FIREABLE [Transketolase2]] & [IS_FIREABLE [Transaldolase] & IS_FIREABLE [TIM_forward]]]] & ~ [[~ [IS_FIREABLE [Phosphoglycerate_kinase]] | [IS_FIREABLE [remove] | IS_FIREABLE [remove]]]]]]
normalized: E [true U [~ [[~ [IS_FIREABLE [Phosphoglycerate_kinase]] | [IS_FIREABLE [remove] | IS_FIREABLE [remove]]]] & [[[IS_FIREABLE [Transaldolase] & IS_FIREABLE [TIM_forward]] & ~ [IS_FIREABLE [Transketolase2]]] | [[IS_FIREABLE [Ru5P_isomerase] | IS_FIREABLE [Phosphoglycerate_kinase]] | ~ [IS_FIREABLE [remove]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m 3.916sec


Total processing time: 18m16.711sec


BK_STOP 1465064580103

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.001sec

1224 2424 72267 107126 157421 212078 265350 315671 396578 476100 549948 561475
iterations count:12167 (553), effective:2934 (133)

initing FirstDep: 0m 0.000sec


iterations count:186 (8), effective:28 (1)

iterations count:187 (8), effective:29 (1)

iterations count:130 (5), effective:17 (0)

iterations count:187 (8), effective:29 (1)

iterations count:158 (7), effective:25 (1)

iterations count:251 (11), effective:48 (2)

iterations count:250 (11), effective:48 (2)

iterations count:286 (13), effective:58 (2)
431208 432608
iterations count:2429 (110), effective:540 (24)

iterations count:232 (10), effective:33 (1)

iterations count:183 (8), effective:28 (1)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C1000N0000000100"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/root/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C1000N0000000100.tgz
mv GPPP-PT-C1000N0000000100 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C1000N0000000100, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r221su-smll-146468027900576"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;