Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is GPPP-PT-C1000N0000000010, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r221su-smll-146468027900567
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C1000N0000000010-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1465060525815


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: GPPP_PT_C1000N0000000010
(NrP: 33 NrTr: 22 NrArc: 83)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 3.665sec


RS generation: 0m 0.209sec


-> reachability set: #nodes 19855 (2.0e+04) #states 14,184,612,091 (10)



starting MCC model checker
--------------------------

checking: EF [IS_FIREABLE [Lactate_dehydrogenase]]
normalized: E [true U IS_FIREABLE [Lactate_dehydrogenase]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.691sec

checking: EF [[IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Ru5P_epimerase]]]
normalized: E [true U [IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Ru5P_epimerase]]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.005sec

checking: EF [~ [~ [[IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [Transketolase1]]]]]
normalized: E [true U [IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [Transketolase1]]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.024sec

checking: AG [[[~ [IS_FIREABLE [GAP_dehydrogenase]] | [~ [IS_FIREABLE [Phosphofructokinase]] & IS_FIREABLE [Ru5P_epimerase]]] | ~ [IS_FIREABLE [Phosphoglycerate_kinase]]]]
normalized: ~ [E [true U ~ [[[[IS_FIREABLE [Ru5P_epimerase] & ~ [IS_FIREABLE [Phosphofructokinase]]] | ~ [IS_FIREABLE [GAP_dehydrogenase]]] | ~ [IS_FIREABLE [Phosphoglycerate_kinase]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.144sec

checking: EF [[IS_FIREABLE [Phosphoglycerate_kinase] & ~ [[~ [IS_FIREABLE [TIM_backward]] | [IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [generate]]]]]]
normalized: E [true U [IS_FIREABLE [Phosphoglycerate_kinase] & ~ [[~ [IS_FIREABLE [TIM_backward]] | [IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [generate]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.424sec

checking: EF [[[~ [~ [IS_FIREABLE [TIM_forward]]] & [[IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [TIM_backward]] | IS_FIREABLE [Phosphofructokinase]]] & IS_FIREABLE [Lactate_dehydrogenase]]]
normalized: E [true U [IS_FIREABLE [Lactate_dehydrogenase] & [IS_FIREABLE [TIM_forward] & [IS_FIREABLE [Phosphofructokinase] | [IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [TIM_backward]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.024sec

checking: AG [[~ [~ [[IS_FIREABLE [Aldolase] & IS_FIREABLE [Ru5P_isomerase]]]] | ~ [[[IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [Lactate_dehydrogenase]] & ~ [IS_FIREABLE [Phosphoglycerate_kinase]]]]]]
normalized: ~ [E [true U ~ [[~ [[[IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [Lactate_dehydrogenase]] & ~ [IS_FIREABLE [Phosphoglycerate_kinase]]]] | [IS_FIREABLE [Aldolase] & IS_FIREABLE [Ru5P_isomerase]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.399sec

checking: EF [~ [[~ [IS_FIREABLE [Phosphoglycerate_mutase]] | [[IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Phosphoglycerate_mutase]] & [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Phosphoclucose_isomerase]]]]]]
normalized: E [true U ~ [[[[IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Phosphoglycerate_mutase]] & [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Phosphoclucose_isomerase]]] | ~ [IS_FIREABLE [Phosphoglycerate_mutase]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.191sec

checking: AG [[~ [~ [[IS_FIREABLE [G6P_dehydrogenase] | IS_FIREABLE [Ru5P_epimerase]]]] | [~ [IS_FIREABLE [Glutathione_oxidation]] | ~ [[IS_FIREABLE [Transaldolase] & IS_FIREABLE [Pyruvate_kinase]]]]]]
normalized: ~ [E [true U ~ [[[~ [[IS_FIREABLE [Transaldolase] & IS_FIREABLE [Pyruvate_kinase]]] | ~ [IS_FIREABLE [Glutathione_oxidation]]] | [IS_FIREABLE [G6P_dehydrogenase] | IS_FIREABLE [Ru5P_epimerase]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.030sec

checking: AG [[~ [[~ [IS_FIREABLE [generate]] & ~ [IS_FIREABLE [G6P_dehydrogenase]]]] | ~ [[[IS_FIREABLE [remove] & IS_FIREABLE [Lactate_dehydrogenase]] & ~ [IS_FIREABLE [Glutathione_oxidation]]]]]]
normalized: ~ [E [true U ~ [[~ [[[IS_FIREABLE [remove] & IS_FIREABLE [Lactate_dehydrogenase]] & ~ [IS_FIREABLE [Glutathione_oxidation]]]] | ~ [[~ [IS_FIREABLE [G6P_dehydrogenase]] & ~ [IS_FIREABLE [generate]]]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.049sec

checking: EF [[[IS_FIREABLE [Phosphoglycerate_kinase] | ~ [~ [IS_FIREABLE [Pyruvate_kinase]]]] & ~ [[[IS_FIREABLE [Transaldolase] | IS_FIREABLE [Glutathione_reductose]] | [IS_FIREABLE [remove] | IS_FIREABLE [Lactate_dehydrogenase]]]]]]
normalized: E [true U [~ [[[IS_FIREABLE [Transaldolase] | IS_FIREABLE [Glutathione_reductose]] | [IS_FIREABLE [remove] | IS_FIREABLE [Lactate_dehydrogenase]]]] & [IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [Pyruvate_kinase]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.618sec

checking: EF [[[~ [~ [IS_FIREABLE [Phosphoglycerate_kinase]]] | IS_FIREABLE [Ru5P_epimerase]] & [[~ [IS_FIREABLE [Transketolase2]] | [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Phosphoglycerate_mutase]]] & IS_FIREABLE [Phosphoclucose_isomerase]]]]
normalized: E [true U [[IS_FIREABLE [Phosphoclucose_isomerase] & [~ [IS_FIREABLE [Transketolase2]] | [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Phosphoglycerate_mutase]]]] & [IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [Ru5P_epimerase]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.036sec

checking: AG [~ [[[~ [IS_FIREABLE [Transketolase1]] & [IS_FIREABLE [Transketolase1] & IS_FIREABLE [Pyruvate_kinase]]] | [[IS_FIREABLE [Transketolase2] | IS_FIREABLE [generate]] & [IS_FIREABLE [generate] & IS_FIREABLE [G6P_dehydrogenase]]]]]]
normalized: ~ [E [true U [[[IS_FIREABLE [Transketolase2] | IS_FIREABLE [generate]] & [IS_FIREABLE [generate] & IS_FIREABLE [G6P_dehydrogenase]]] | [[IS_FIREABLE [Transketolase1] & IS_FIREABLE [Pyruvate_kinase]] & ~ [IS_FIREABLE [Transketolase1]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: EF [[[[[IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [Transketolase2]] & IS_FIREABLE [G6P_dehydrogenase]] & [IS_FIREABLE [Transaldolase] | IS_FIREABLE [Ru5P_epimerase]]] & [[~ [IS_FIREABLE [Phosphofructokinase]] & ~ [IS_FIREABLE [Phosphoclucose_isomerase]]] & IS_FIREABLE [Aldolase]]]]
normalized: E [true U [[IS_FIREABLE [Aldolase] & [~ [IS_FIREABLE [Phosphofructokinase]] & ~ [IS_FIREABLE [Phosphoclucose_isomerase]]]] & [[IS_FIREABLE [Transaldolase] | IS_FIREABLE [Ru5P_epimerase]] & [IS_FIREABLE [G6P_dehydrogenase] & [IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [Transketolase2]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.925sec

checking: AG [[[~ [[IS_FIREABLE [Phosphoclucose_isomerase] & IS_FIREABLE [Aldolase]]] | IS_FIREABLE [Pyruvate_kinase]] & [[[IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [TIM_forward]] & ~ [IS_FIREABLE [Enolase]]] | ~ [[IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [Aldolase]]]]]]
normalized: ~ [E [true U ~ [[[~ [[IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [Aldolase]]] | [~ [IS_FIREABLE [Enolase]] & [IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [TIM_forward]]]] & [IS_FIREABLE [Pyruvate_kinase] | ~ [[IS_FIREABLE [Phosphoclucose_isomerase] & IS_FIREABLE [Aldolase]]]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.787sec

checking: AG [[[[~ [IS_FIREABLE [Transaldolase]] & [IS_FIREABLE [Transaldolase] & IS_FIREABLE [Aldolase]]] | [IS_FIREABLE [generate] | [IS_FIREABLE [Transketolase1] & IS_FIREABLE [Transketolase1]]]] | [~ [IS_FIREABLE [Enolase]] | [[IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [Lactate_dehydrogenase]] & [IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [Glutathione_oxidation]]]]]]
normalized: ~ [E [true U ~ [[[[[IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [Glutathione_oxidation]] & [IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [Lactate_dehydrogenase]]] | ~ [IS_FIREABLE [Enolase]]] | [[IS_FIREABLE [generate] | [IS_FIREABLE [Transketolase1] & IS_FIREABLE [Transketolase1]]] | [[IS_FIREABLE [Transaldolase] & IS_FIREABLE [Aldolase]] & ~ [IS_FIREABLE [Transaldolase]]]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C1000N0000000010-ReachabilityFireability-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.711sec


Total processing time: 0m13.758sec


BK_STOP 1465060539613

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.001sec

12422
iterations count:1727 (78), effective:414 (18)

initing FirstDep: 0m 0.000sec


iterations count:187 (8), effective:29 (1)

iterations count:416 (18), effective:96 (4)

iterations count:276 (12), effective:57 (2)

iterations count:233 (10), effective:44 (2)

iterations count:207 (9), effective:34 (1)

iterations count:405 (18), effective:72 (3)

iterations count:205 (9), effective:43 (1)

iterations count:555 (25), effective:116 (5)

iterations count:251 (11), effective:45 (2)

iterations count:191 (8), effective:34 (1)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C1000N0000000010"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/root/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C1000N0000000010.tgz
mv GPPP-PT-C1000N0000000010 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C1000N0000000010, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r221su-smll-146468027900567"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;