Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...............
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is GPPP-PT-C0100N0000001000, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r221su-smll-146468027800540
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C0100N0000001000-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1465047658848


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: GPPP_PT_C0100N0000001000
(NrP: 33 NrTr: 22 NrArc: 83)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 4.000sec


RS generation: 5m11.503sec


-> reachability set: #nodes 713713 (7.1e+05) #states 20,292,531,036,711,574 (16)



starting MCC model checker
--------------------------

checking: AG [~ [IS_FIREABLE [Transketolase2]]]
normalized: ~ [E [true U IS_FIREABLE [Transketolase2]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000001000-ReachabilityFireability-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m37.580sec

checking: EF [IS_FIREABLE [remove]]
normalized: E [true U IS_FIREABLE [remove]]

-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000001000-ReachabilityFireability-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.945sec

checking: EF [IS_FIREABLE [Enolase]]
normalized: E [true U IS_FIREABLE [Enolase]]


FORMULA GPPP-PT-C0100N0000001000-ReachabilityFireability-7 CANNOT_COMPUTE

MC time: 1m12.074sec

checking: AG [~ [IS_FIREABLE [Pyruvate_kinase]]]
normalized: ~ [E [true U IS_FIREABLE [Pyruvate_kinase]]]


FORMULA GPPP-PT-C0100N0000001000-ReachabilityFireability-10 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: AG [[~ [IS_FIREABLE [Transketolase2]] | IS_FIREABLE [Phosphoclucose_isomerase]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [Phosphoclucose_isomerase] | ~ [IS_FIREABLE [Transketolase2]]]]]]


before gc: list nodes free: 70

after gc: idd nodes used:1225266, unused:62774734; list nodes free:679255496
-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000001000-ReachabilityFireability-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m48.313sec

checking: EF [[IS_FIREABLE [generate] & IS_FIREABLE [G6P_dehydrogenase]]]
normalized: E [true U [IS_FIREABLE [generate] & IS_FIREABLE [G6P_dehydrogenase]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000001000-ReachabilityFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m42.413sec

checking: EF [[~ [IS_FIREABLE [G6P_dehydrogenase]] & IS_FIREABLE [Lactate_dehydrogenase]]]
normalized: E [true U [IS_FIREABLE [Lactate_dehydrogenase] & ~ [IS_FIREABLE [G6P_dehydrogenase]]]]


before gc: list nodes free: 203318658

after gc: idd nodes used:1949567, unused:62050433; list nodes free:675300030

before gc: list nodes free: 197221405

after gc: idd nodes used:1881225, unused:62118775; list nodes free:675239731

before gc: list nodes free: 155621054

after gc: idd nodes used:1758884, unused:62241116; list nodes free:675436205

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

1224 2424 73587 110316 165837 246129 341007 460030 602163 706663 767073
iterations count:11921 (541), effective:2875 (130)

initing FirstDep: 0m 0.000sec


iterations count:130 (5), effective:17 (0)
std::bad_alloc

std::bad_alloc


iterations count:142 (6), effective:18 (0)
714423 714831 715227 714891 714891

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000001000"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/root/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000001000.tgz
mv GPPP-PT-C0100N0000001000 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0100N0000001000, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r221su-smll-146468027800540"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;