Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is GPPP-PT-C0100N0000000010, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r221su-smll-146468027800517
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-0
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-1
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-10
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-11
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-12
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-13
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-14
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-15
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-2
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-3
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-4
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-5
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-6
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-7
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-8
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1465039374407


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: GPPP_PT_C0100N0000000010
(NrP: 33 NrTr: 22 NrArc: 83)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 3.816sec


RS generation: 0m 0.213sec


-> reachability set: #nodes 19855 (2.0e+04) #states 14,184,612,091 (10)



starting MCC model checker
--------------------------

checking: EX [EF [EX [IS_FIREABLE [remove]]]]
normalized: EX [E [true U EX [IS_FIREABLE [remove]]]]

..-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.014sec

checking: AF [IS_FIREABLE [TIM_backward]]
normalized: ~ [EG [~ [IS_FIREABLE [TIM_backward]]]]

.......................................................................................................................................................................................................................................................................................................................................................................
EG iterations: 359
-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m19.231sec

checking: EF [AF [AX [IS_FIREABLE [Phosphoglycerate_kinase]]]]
normalized: E [true U ~ [EG [EX [~ [IS_FIREABLE [Phosphoglycerate_kinase]]]]]]

....................................................................................................................................................................................................................................................................................................................................................................................
EG iterations: 371
-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m15.053sec

checking: EG [EF [EF [IS_FIREABLE [remove]]]]
normalized: EG [E [true U E [true U IS_FIREABLE [remove]]]]

.
EG iterations: 1
-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: ~ [EF [AG [[IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Ru5P_epimerase]]]]]
normalized: ~ [E [true U ~ [E [true U ~ [[IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Ru5P_epimerase]]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.020sec

checking: AG [EF [~ [[IS_FIREABLE [Pyruvate_kinase] & IS_FIREABLE [GAP_dehydrogenase]]]]]
normalized: ~ [E [true U ~ [E [true U ~ [[IS_FIREABLE [Pyruvate_kinase] & IS_FIREABLE [GAP_dehydrogenase]]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.292sec

checking: EF [[IS_FIREABLE [Transketolase2] & ~ [IS_FIREABLE [GAP_dehydrogenase]]]]
normalized: E [true U [IS_FIREABLE [Transketolase2] & ~ [IS_FIREABLE [GAP_dehydrogenase]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.194sec

checking: EF [A [~ [IS_FIREABLE [Enolase]] U [IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [GAP_dehydrogenase]]]]
normalized: E [true U [~ [EG [~ [[IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [GAP_dehydrogenase]]]]] & ~ [E [~ [[IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [GAP_dehydrogenase]]] U [IS_FIREABLE [Enolase] & ~ [[IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [GAP_dehydrogenase]]]]]]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.230sec

checking: EF [AX [[[IS_FIREABLE [Phosphoclucose_isomerase] & IS_FIREABLE [Hexokinase]] & IS_FIREABLE [TIM_backward]]]]
normalized: E [true U ~ [EX [~ [[IS_FIREABLE [TIM_backward] & [IS_FIREABLE [Phosphoclucose_isomerase] & IS_FIREABLE [Hexokinase]]]]]]]

.-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.455sec

checking: ~ [AG [[[[IS_FIREABLE [TIM_forward] & IS_FIREABLE [remove]] & IS_FIREABLE [Ru5P_epimerase]] | EF [IS_FIREABLE [Phosphoglycerate_kinase]]]]]
normalized: E [true U ~ [[E [true U IS_FIREABLE [Phosphoglycerate_kinase]] | [IS_FIREABLE [Ru5P_epimerase] & [IS_FIREABLE [TIM_forward] & IS_FIREABLE [remove]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.334sec

checking: AG [[[AG [IS_FIREABLE [remove]] & ~ [[IS_FIREABLE [generate] | IS_FIREABLE [GAP_dehydrogenase]]]] | [AF [IS_FIREABLE [Lactate_dehydrogenase]] | ~ [[IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [generate]]]]]]
normalized: ~ [E [true U ~ [[[~ [[IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [generate]]] | ~ [EG [~ [IS_FIREABLE [Lactate_dehydrogenase]]]]] | [~ [[IS_FIREABLE [generate] | IS_FIREABLE [GAP_dehydrogenase]]] & ~ [E [true U ~ [IS_FIREABLE [remove]]]]]]]]]

...................................................................................................................................................................................................................................................................................................................................................
EG iterations: 339
-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m15.114sec

checking: [[~ [[~ [IS_FIREABLE [remove]] & EF [IS_FIREABLE [G6P_dehydrogenase]]]] & AF [EG [IS_FIREABLE [Transketolase2]]]] | [AG [~ [[IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Lactate_dehydrogenase]]]] | IS_FIREABLE [Glutathione_reductose]]]
normalized: [[IS_FIREABLE [Glutathione_reductose] | ~ [E [true U [IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Lactate_dehydrogenase]]]]] | [~ [EG [~ [EG [IS_FIREABLE [Transketolase2]]]]] & ~ [[E [true U IS_FIREABLE [G6P_dehydrogenase]] & ~ [IS_FIREABLE [remove]]]]]]

........................................................................................................................................................................................................................................................................................................................................
EG iterations: 328
.
EG iterations: 1
-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 6.227sec

checking: [E [EF [IS_FIREABLE [Pyruvate_kinase]] U EG [IS_FIREABLE [Transaldolase]]] | [IS_FIREABLE [Glutathione_oxidation] & [EF [~ [IS_FIREABLE [Ru5P_isomerase]]] | [IS_FIREABLE [Lactate_dehydrogenase] & [~ [IS_FIREABLE [Phosphoglycerate_kinase]] & ~ [IS_FIREABLE [Phosphoglycerate_mutase]]]]]]]
normalized: [[IS_FIREABLE [Glutathione_oxidation] & [[IS_FIREABLE [Lactate_dehydrogenase] & [~ [IS_FIREABLE [Phosphoglycerate_mutase]] & ~ [IS_FIREABLE [Phosphoglycerate_kinase]]]] | E [true U ~ [IS_FIREABLE [Ru5P_isomerase]]]]] | E [E [true U IS_FIREABLE [Pyruvate_kinase]] U EG [IS_FIREABLE [Transaldolase]]]]

........................................................................................................................................................................................................................................
EG iterations: 232
-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.195sec

checking: [EF [[AG [IS_FIREABLE [TIM_forward]] & [~ [IS_FIREABLE [generate]] & [IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [G6P_dehydrogenase]]]]] & A [AX [IS_FIREABLE [Hexokinase]] U [~ [IS_FIREABLE [Aldolase]] | [IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [Phosphofructokinase]]]]]
normalized: [[~ [EG [~ [[[IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [Phosphofructokinase]] | ~ [IS_FIREABLE [Aldolase]]]]]] & ~ [E [~ [[[IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [Phosphofructokinase]] | ~ [IS_FIREABLE [Aldolase]]]] U [EX [~ [IS_FIREABLE [Hexokinase]]] & ~ [[[IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [Phosphofructokinase]] | ~ [IS_FIREABLE [Aldolase]]]]]]]] & E [true U [[[IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [G6P_dehydrogenase]] & ~ [IS_FIREABLE [generate]]] & ~ [E [true U ~ [IS_FIREABLE [TIM_forward]]]]]]]

.................................................................................................................................................................................................................................................................................................................................
EG iterations: 320
-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m12.118sec

checking: [[AF [[~ [IS_FIREABLE [Glutathione_reductose]] | [IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [Phosphoclucose_isomerase]]]] & AG [EF [IS_FIREABLE [G6P_dehydrogenase]]]] | [[IS_FIREABLE [Transketolase2] | [[~ [IS_FIREABLE [Transketolase2]] & ~ [IS_FIREABLE [Glutathione_oxidation]]] & IS_FIREABLE [GAP_dehydrogenase]]] | IS_FIREABLE [Phosphofructokinase]]]
normalized: [[IS_FIREABLE [Phosphofructokinase] | [IS_FIREABLE [Transketolase2] | [IS_FIREABLE [GAP_dehydrogenase] & [~ [IS_FIREABLE [Transketolase2]] & ~ [IS_FIREABLE [Glutathione_oxidation]]]]]] | [~ [E [true U ~ [E [true U IS_FIREABLE [G6P_dehydrogenase]]]]] & ~ [EG [~ [[[IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [Phosphoclucose_isomerase]] | ~ [IS_FIREABLE [Glutathione_reductose]]]]]]]]

........................................................................................................................................................................................................................................................................................................................................................................................
EG iterations: 376
-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m15.774sec

checking: [E [EX [IS_FIREABLE [Transaldolase]] U [[IS_FIREABLE [generate] & IS_FIREABLE [Phosphoglycerate_kinase]] & [IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [Glutathione_oxidation]]]] | [EF [[~ [IS_FIREABLE [GAP_dehydrogenase]] & [IS_FIREABLE [Phosphofructokinase] & IS_FIREABLE [generate]]]] & ~ [[EX [IS_FIREABLE [Transaldolase]] & IS_FIREABLE [Hexokinase]]]]]
normalized: [[~ [[IS_FIREABLE [Hexokinase] & EX [IS_FIREABLE [Transaldolase]]]] & E [true U [[IS_FIREABLE [Phosphofructokinase] & IS_FIREABLE [generate]] & ~ [IS_FIREABLE [GAP_dehydrogenase]]]]] | E [EX [IS_FIREABLE [Transaldolase]] U [[IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [Glutathione_oxidation]] & [IS_FIREABLE [generate] & IS_FIREABLE [Phosphoglycerate_kinase]]]]]

..-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000000010-CTLFireability-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.021sec


Total processing time: 1m37.026sec


BK_STOP 1465039471586

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

12422
iterations count:1727 (78), effective:414 (18)

initing FirstDep: 0m 0.000sec


iterations count:528 (24), effective:108 (4)

iterations count:22 (1), effective:0 (0)

iterations count:46 (2), effective:6 (0)

iterations count:162 (7), effective:21 (0)

iterations count:314 (14), effective:71 (3)

iterations count:273 (12), effective:51 (2)
19382
iterations count:1738 (79), effective:435 (19)

iterations count:183 (8), effective:28 (1)

iterations count:552 (25), effective:110 (5)

iterations count:22 (1), effective:0 (0)

iterations count:120 (5), effective:24 (1)

iterations count:183 (8), effective:28 (1)

iterations count:106 (4), effective:13 (0)

iterations count:25 (1), effective:1 (0)

iterations count:50 (2), effective:7 (0)

iterations count:232 (10), effective:42 (1)

iterations count:120 (5), effective:24 (1)
21537
iterations count:1490 (67), effective:331 (15)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000000010"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/root/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000000010.tgz
mv GPPP-PT-C0100N0000000010 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0100N0000000010, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r221su-smll-146468027800517"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;