Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..............
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is GPPP-PT-C0010N1000000000, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r221su-smll-146468027800513
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C0010N1000000000-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1465039293934


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: GPPP_PT_C0010N1000000000
(NrP: 33 NrTr: 22 NrArc: 83)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 3.735sec


RS generation: 0m 0.317sec


-> reachability set: #nodes 22693 (2.3e+04) #states 176,894,515,156 (11)



starting MCC model checker
--------------------------

checking: EF [IS_FIREABLE [Transketolase2]]
normalized: E [true U IS_FIREABLE [Transketolase2]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.302sec

checking: EF [IS_FIREABLE [Transketolase2]]
normalized: E [true U IS_FIREABLE [Transketolase2]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [IS_FIREABLE [Phosphoglycerate_mutase]]
normalized: E [true U IS_FIREABLE [Phosphoglycerate_mutase]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.105sec

checking: EF [[IS_FIREABLE [Enolase] & IS_FIREABLE [G6P_dehydrogenase]]]
normalized: E [true U [IS_FIREABLE [Enolase] & IS_FIREABLE [G6P_dehydrogenase]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.194sec

checking: EF [[IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Phosphoclucose_isomerase]]]
normalized: E [true U [IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Phosphoclucose_isomerase]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.210sec

checking: AG [~ [[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [TIM_forward]]]]
normalized: ~ [E [true U [IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [TIM_forward]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.400sec

checking: EF [[IS_FIREABLE [remove] | [[IS_FIREABLE [Phosphofructokinase] | ~ [IS_FIREABLE [TIM_forward]]] & IS_FIREABLE [Pyruvate_kinase]]]]
normalized: E [true U [IS_FIREABLE [remove] | [IS_FIREABLE [Pyruvate_kinase] & [IS_FIREABLE [Phosphofructokinase] | ~ [IS_FIREABLE [TIM_forward]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.414sec

checking: EF [~ [[[IS_FIREABLE [Hexokinase] | ~ [IS_FIREABLE [Phosphoclucose_isomerase]]] | ~ [[IS_FIREABLE [remove] & IS_FIREABLE [Enolase]]]]]]
normalized: E [true U ~ [[~ [[IS_FIREABLE [remove] & IS_FIREABLE [Enolase]]] | [IS_FIREABLE [Hexokinase] | ~ [IS_FIREABLE [Phosphoclucose_isomerase]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.067sec

checking: AG [~ [[~ [IS_FIREABLE [Enolase]] & [~ [IS_FIREABLE [Pyruvate_kinase]] & [IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [TIM_forward]]]]]]
normalized: ~ [E [true U [[~ [IS_FIREABLE [Pyruvate_kinase]] & [IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [TIM_forward]]] & ~ [IS_FIREABLE [Enolase]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.693sec

checking: EF [[[IS_FIREABLE [Phosphoglycerate_kinase] & IS_FIREABLE [Lactate_dehydrogenase]] & [~ [~ [IS_FIREABLE [remove]]] | ~ [IS_FIREABLE [Phosphoglycerate_kinase]]]]]
normalized: E [true U [[IS_FIREABLE [remove] | ~ [IS_FIREABLE [Phosphoglycerate_kinase]]] & [IS_FIREABLE [Phosphoglycerate_kinase] & IS_FIREABLE [Lactate_dehydrogenase]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.128sec

checking: EF [[[[~ [IS_FIREABLE [Hexokinase]] | ~ [IS_FIREABLE [Glutathione_reductose]]] & [IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [generate]]] & ~ [IS_FIREABLE [Glutathione_oxidation]]]]
normalized: E [true U [~ [IS_FIREABLE [Glutathione_oxidation]] & [[IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [generate]] & [~ [IS_FIREABLE [Glutathione_reductose]] | ~ [IS_FIREABLE [Hexokinase]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.093sec

checking: EF [[[[IS_FIREABLE [Phosphoglycerate_mutase] & [IS_FIREABLE [Transaldolase] | IS_FIREABLE [Transketolase1]]] & IS_FIREABLE [Transketolase1]] & ~ [~ [IS_FIREABLE [Lactate_dehydrogenase]]]]]
normalized: E [true U [IS_FIREABLE [Lactate_dehydrogenase] & [IS_FIREABLE [Transketolase1] & [IS_FIREABLE [Phosphoglycerate_mutase] & [IS_FIREABLE [Transaldolase] | IS_FIREABLE [Transketolase1]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.862sec

checking: EF [[~ [~ [~ [IS_FIREABLE [Glutathione_reductose]]]] & [[IS_FIREABLE [G6P_dehydrogenase] & [IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Aldolase]]] & IS_FIREABLE [Lactate_dehydrogenase]]]]
normalized: E [true U [[IS_FIREABLE [Lactate_dehydrogenase] & [IS_FIREABLE [G6P_dehydrogenase] & [IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Aldolase]]]] & ~ [IS_FIREABLE [Glutathione_reductose]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.964sec

checking: EF [[~ [[~ [IS_FIREABLE [Phosphoglycerate_mutase]] | [IS_FIREABLE [Transketolase1] | IS_FIREABLE [Transaldolase]]]] & ~ [[~ [IS_FIREABLE [Aldolase]] & [IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Enolase]]]]]]
normalized: E [true U [~ [[~ [IS_FIREABLE [Aldolase]] & [IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Enolase]]]] & ~ [[[IS_FIREABLE [Transketolase1] | IS_FIREABLE [Transaldolase]] | ~ [IS_FIREABLE [Phosphoglycerate_mutase]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.519sec

checking: AG [[[[IS_FIREABLE [Glutathione_reductose] | [IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [remove]]] | [[IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Glutathione_oxidation]] | [IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [Glutathione_reductose]]]] | ~ [[[IS_FIREABLE [Enolase] & IS_FIREABLE [Aldolase]] & ~ [IS_FIREABLE [GAP_dehydrogenase]]]]]]
normalized: ~ [E [true U ~ [[~ [[[IS_FIREABLE [Enolase] & IS_FIREABLE [Aldolase]] & ~ [IS_FIREABLE [GAP_dehydrogenase]]]] | [[[IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [Glutathione_reductose]] | [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Glutathione_oxidation]]] | [IS_FIREABLE [Glutathione_reductose] | [IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [remove]]]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.064sec

checking: EF [[[~ [[IS_FIREABLE [Transketolase1] | IS_FIREABLE [Phosphoclucose_isomerase]]] | [~ [IS_FIREABLE [Glutathione_oxidation]] | [IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [Enolase]]]] & [[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Lactate_dehydrogenase]] & [[IS_FIREABLE [Hexokinase] & IS_FIREABLE [Ru5P_isomerase]] & IS_FIREABLE [TIM_forward]]]]]
normalized: E [true U [[[IS_FIREABLE [TIM_forward] & [IS_FIREABLE [Hexokinase] & IS_FIREABLE [Ru5P_isomerase]]] & [IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Lactate_dehydrogenase]]] & [[[IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [Enolase]] | ~ [IS_FIREABLE [Glutathione_oxidation]]] | ~ [[IS_FIREABLE [Transketolase1] | IS_FIREABLE [Phosphoclucose_isomerase]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N1000000000-ReachabilityFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.903sec


Total processing time: 0m16.966sec


BK_STOP 1465039310944

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.001sec

16448
iterations count:1481 (67), effective:355 (16)

initing FirstDep: 0m 0.000sec


iterations count:130 (5), effective:17 (0)

iterations count:130 (5), effective:17 (0)

iterations count:518 (23), effective:74 (3)

iterations count:524 (23), effective:76 (3)

iterations count:648 (29), effective:84 (3)

iterations count:674 (30), effective:94 (4)

iterations count:564 (25), effective:86 (3)

iterations count:722 (32), effective:110 (5)

iterations count:711 (32), effective:102 (4)

iterations count:846 (38), effective:171 (7)

iterations count:543 (24), effective:84 (3)
23244
iterations count:1076 (48), effective:261 (11)

iterations count:730 (33), effective:106 (4)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0010N1000000000"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/root/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0010N1000000000.tgz
mv GPPP-PT-C0010N1000000000 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0010N1000000000, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r221su-smll-146468027800513"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;