Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is GPPP-PT-C0010N0000000100, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r221su-smll-146468027700499
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-0
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-1
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-10
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-11
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-12
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-13
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-14
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-15
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-2
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-3
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-4
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-5
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-6
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-7
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-8
FORMULA_NAME GPPP-PT-C0010N0000000100-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1465039050955


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: GPPP_PT_C0010N0000000100
(NrP: 33 NrTr: 22 NrArc: 83)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 3.739sec


RS generation: 0m 0.329sec


-> reachability set: #nodes 22693 (2.3e+04) #states 176,894,515,156 (11)



starting MCC model checker
--------------------------

checking: EF [EX [AG [IS_FIREABLE [Ru5P_isomerase]]]]
normalized: E [true U EX [~ [E [true U ~ [IS_FIREABLE [Ru5P_isomerase]]]]]]

.-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.235sec

checking: AF [~ [~ [AF [IS_FIREABLE [TIM_forward]]]]]
normalized: ~ [EG [EG [~ [IS_FIREABLE [TIM_forward]]]]]

.......................................................................................................................................................................................................................................................................................................................
EG iterations: 311
.
EG iterations: 1
-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m28.535sec

checking: EF [AG [EG [IS_FIREABLE [Transketolase1]]]]
normalized: E [true U ~ [E [true U ~ [EG [IS_FIREABLE [Transketolase1]]]]]]

.......................................................................................................................................................................................................................................
EG iterations: 231
-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m13.407sec

checking: AF [EX [EG [IS_FIREABLE [TIM_backward]]]]
normalized: ~ [EG [~ [EX [EG [IS_FIREABLE [TIM_backward]]]]]]

.......................................................................................................................................................................................................................................
EG iterations: 231
........................................................................................................................................................................................................................................................................................
EG iterations: 279
-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m30.857sec

checking: AG [AG [EF [IS_FIREABLE [TIM_backward]]]]
normalized: ~ [E [true U E [true U ~ [E [true U IS_FIREABLE [TIM_backward]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.379sec

checking: [EG [~ [~ [~ [IS_FIREABLE [TIM_backward]]]]] & ~ [AG [~ [IS_FIREABLE [remove]]]]]
normalized: [E [true U IS_FIREABLE [remove]] & EG [~ [IS_FIREABLE [TIM_backward]]]]

.........................................................................................................................................................................................................................................................................................................
EG iterations: 297
-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m21.545sec

checking: ~ [E [~ [IS_FIREABLE [Ru5P_epimerase]] U EG [IS_FIREABLE [Phosphoclucose_isomerase]]]]
normalized: ~ [E [~ [IS_FIREABLE [Ru5P_epimerase]] U EG [IS_FIREABLE [Phosphoclucose_isomerase]]]]

..................................................................................................................................................................................
EG iterations: 178
-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 3.057sec

checking: [~ [IS_FIREABLE [Transketolase1]] & AG [EG [~ [IS_FIREABLE [Pyruvate_kinase]]]]]
normalized: [~ [E [true U ~ [EG [~ [IS_FIREABLE [Pyruvate_kinase]]]]]] & ~ [IS_FIREABLE [Transketolase1]]]

..............................................................................................................................................................................................................
EG iterations: 206
-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m13.545sec

checking: ~ [EX [[AF [IS_FIREABLE [TIM_backward]] | AX [IS_FIREABLE [Ru5P_epimerase]]]]]
normalized: ~ [EX [[~ [EX [~ [IS_FIREABLE [Ru5P_epimerase]]]] | ~ [EG [~ [IS_FIREABLE [TIM_backward]]]]]]]

.........................................................................................................................................................................................................................................................................................................
EG iterations: 297
..-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.684sec

checking: [IS_FIREABLE [GAP_dehydrogenase] | [AG [IS_FIREABLE [Ru5P_isomerase]] | ~ [AG [~ [IS_FIREABLE [Lactate_dehydrogenase]]]]]]
normalized: [IS_FIREABLE [GAP_dehydrogenase] | [E [true U IS_FIREABLE [Lactate_dehydrogenase]] | ~ [E [true U ~ [IS_FIREABLE [Ru5P_isomerase]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.637sec

checking: [EF [AG [[IS_FIREABLE [Transketolase2] & IS_FIREABLE [remove]]]] | EG [IS_FIREABLE [remove]]]
normalized: [EG [IS_FIREABLE [remove]] | E [true U ~ [E [true U ~ [[IS_FIREABLE [Transketolase2] & IS_FIREABLE [remove]]]]]]]

.
EG iterations: 1
-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.022sec

checking: [EX [IS_FIREABLE [Phosphoglycerate_mutase]] | AG [EF [[IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [remove]]]]]
normalized: [~ [E [true U ~ [E [true U [IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [remove]]]]]] | EX [IS_FIREABLE [Phosphoglycerate_mutase]]]

.-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.407sec

checking: ~ [EG [[EF [IS_FIREABLE [remove]] & [[IS_FIREABLE [Glutathione_oxidation] | IS_FIREABLE [generate]] | ~ [IS_FIREABLE [Ru5P_isomerase]]]]]]
normalized: ~ [EG [[[[IS_FIREABLE [Glutathione_oxidation] | IS_FIREABLE [generate]] | ~ [IS_FIREABLE [Ru5P_isomerase]]] & E [true U IS_FIREABLE [remove]]]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.021sec

checking: [IS_FIREABLE [GAP_dehydrogenase] | ~ [[[~ [~ [IS_FIREABLE [G6P_dehydrogenase]]] | EF [IS_FIREABLE [Ru5P_epimerase]]] & AF [[IS_FIREABLE [TIM_forward] | IS_FIREABLE [Phosphoglycerate_kinase]]]]]]
normalized: [IS_FIREABLE [GAP_dehydrogenase] | ~ [[~ [EG [~ [[IS_FIREABLE [TIM_forward] | IS_FIREABLE [Phosphoglycerate_kinase]]]]] & [IS_FIREABLE [G6P_dehydrogenase] | E [true U IS_FIREABLE [Ru5P_epimerase]]]]]]

...................................................................................................................................................................................................................................................................................................
EG iterations: 291
-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m28.432sec

checking: [AF [AF [[IS_FIREABLE [TIM_backward] | IS_FIREABLE [Phosphofructokinase]]]] | E [~ [~ [IS_FIREABLE [Transketolase1]]] U [IS_FIREABLE [Ru5P_epimerase] | IS_FIREABLE [Pyruvate_kinase]]]]
normalized: [E [IS_FIREABLE [Transketolase1] U [IS_FIREABLE [Ru5P_epimerase] | IS_FIREABLE [Pyruvate_kinase]]] | ~ [EG [EG [~ [[IS_FIREABLE [TIM_backward] | IS_FIREABLE [Phosphofructokinase]]]]]]]

..........................................................................................................................................................................................................................................................
EG iterations: 250
.
EG iterations: 1
-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m22.544sec

checking: [[AG [[[IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [Lactate_dehydrogenase]] | [IS_FIREABLE [TIM_forward] | IS_FIREABLE [TIM_backward]]]] | AF [[[IS_FIREABLE [GAP_dehydrogenase] | IS_FIREABLE [Glutathione_reductose]] | [IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Phosphofructokinase]]]]] & E [EX [IS_FIREABLE [remove]] U EF [IS_FIREABLE [TIM_forward]]]]
normalized: [E [EX [IS_FIREABLE [remove]] U E [true U IS_FIREABLE [TIM_forward]]] & [~ [EG [~ [[[IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Phosphofructokinase]] | [IS_FIREABLE [GAP_dehydrogenase] | IS_FIREABLE [Glutathione_reductose]]]]]] | ~ [E [true U ~ [[[IS_FIREABLE [TIM_forward] | IS_FIREABLE [TIM_backward]] | [IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [Lactate_dehydrogenase]]]]]]]]

..............................................................................................................................................................
EG iterations: 158
.-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000100-CTLFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 8.386sec


Total processing time: 3m 4.200sec


BK_STOP 1465039235393

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.001sec

16448
iterations count:1481 (67), effective:355 (16)

initing FirstDep: 0m 0.000sec


iterations count:25 (1), effective:1 (0)

iterations count:208 (9), effective:33 (1)

iterations count:473 (21), effective:66 (3)

iterations count:864 (39), effective:122 (5)

iterations count:22 (1), effective:0 (0)

iterations count:593 (26), effective:65 (2)

iterations count:521 (23), effective:76 (3)

iterations count:25 (1), effective:1 (0)

iterations count:525 (23), effective:77 (3)

iterations count:22 (1), effective:0 (0)

iterations count:22 (1), effective:0 (0)

iterations count:99 (4), effective:10 (0)

iterations count:119 (5), effective:18 (0)

iterations count:194 (8), effective:28 (1)

iterations count:477 (21), effective:67 (3)

iterations count:22 (1), effective:0 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0010N0000000100"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/root/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0010N0000000100.tgz
mv GPPP-PT-C0010N0000000100 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0010N0000000100, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r221su-smll-146468027700499"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;