Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...............
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is GPPP-PT-C0010N0000000010, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r221su-smll-146468027700495
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C0010N0000000010-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1465039001359


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: GPPP_PT_C0010N0000000010
(NrP: 33 NrTr: 22 NrArc: 83)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 3.965sec


RS generation: 0m 0.283sec


-> reachability set: #nodes 20770 (2.1e+04) #states 23,537,012,497 (10)



starting MCC model checker
--------------------------

checking: EF [IS_FIREABLE [Enolase]]
normalized: E [true U IS_FIREABLE [Enolase]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.831sec

checking: EF [~ [~ [IS_FIREABLE [Enolase]]]]
normalized: E [true U IS_FIREABLE [Enolase]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [IS_FIREABLE [Phosphoglycerate_mutase]]
normalized: E [true U IS_FIREABLE [Phosphoglycerate_mutase]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.641sec

checking: EF [IS_FIREABLE [Lactate_dehydrogenase]]
normalized: E [true U IS_FIREABLE [Lactate_dehydrogenase]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.770sec

checking: EF [[~ [IS_FIREABLE [GAP_dehydrogenase]] & IS_FIREABLE [Pyruvate_kinase]]]
normalized: E [true U [IS_FIREABLE [Pyruvate_kinase] & ~ [IS_FIREABLE [GAP_dehydrogenase]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.902sec

checking: AG [~ [[~ [[IS_FIREABLE [Enolase] & IS_FIREABLE [remove]]] & IS_FIREABLE [Phosphoglycerate_mutase]]]]
normalized: ~ [E [true U [IS_FIREABLE [Phosphoglycerate_mutase] & ~ [[IS_FIREABLE [Enolase] & IS_FIREABLE [remove]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.016sec

checking: EF [[[~ [[IS_FIREABLE [G6P_dehydrogenase] | IS_FIREABLE [Transketolase1]]] & IS_FIREABLE [Hexokinase]] & IS_FIREABLE [remove]]]
normalized: E [true U [IS_FIREABLE [remove] & [IS_FIREABLE [Hexokinase] & ~ [[IS_FIREABLE [G6P_dehydrogenase] | IS_FIREABLE [Transketolase1]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.109sec

checking: EF [[[~ [[IS_FIREABLE [generate] | IS_FIREABLE [TIM_backward]]] & IS_FIREABLE [generate]] & IS_FIREABLE [Transaldolase]]]
normalized: E [true U [IS_FIREABLE [Transaldolase] & [IS_FIREABLE [generate] & ~ [[IS_FIREABLE [generate] | IS_FIREABLE [TIM_backward]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.046sec

checking: EF [[~ [[[IS_FIREABLE [Phosphoglycerate_mutase] | IS_FIREABLE [Phosphoglycerate_mutase]] | [IS_FIREABLE [remove] | IS_FIREABLE [Phosphoglycerate_kinase]]]] & ~ [IS_FIREABLE [Phosphoglycerate_mutase]]]]
normalized: E [true U [~ [[[IS_FIREABLE [remove] | IS_FIREABLE [Phosphoglycerate_kinase]] | [IS_FIREABLE [Phosphoglycerate_mutase] | IS_FIREABLE [Phosphoglycerate_mutase]]]] & ~ [IS_FIREABLE [Phosphoglycerate_mutase]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.608sec

checking: EF [~ [[[~ [IS_FIREABLE [Phosphoclucose_isomerase]] | [IS_FIREABLE [Glutathione_oxidation] | IS_FIREABLE [Hexokinase]]] | [~ [IS_FIREABLE [Phosphoglycerate_kinase]] | ~ [IS_FIREABLE [Hexokinase]]]]]]
normalized: E [true U ~ [[[~ [IS_FIREABLE [Phosphoglycerate_kinase]] | ~ [IS_FIREABLE [Hexokinase]]] | [[IS_FIREABLE [Glutathione_oxidation] | IS_FIREABLE [Hexokinase]] | ~ [IS_FIREABLE [Phosphoclucose_isomerase]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.102sec

checking: AG [~ [[[[IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [G6P_dehydrogenase]] & [IS_FIREABLE [Ru5P_isomerase] | IS_FIREABLE [TIM_forward]]] & ~ [~ [IS_FIREABLE [Transaldolase]]]]]]
normalized: ~ [E [true U [IS_FIREABLE [Transaldolase] & [[IS_FIREABLE [Ru5P_isomerase] | IS_FIREABLE [TIM_forward]] & [IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [G6P_dehydrogenase]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.050sec

checking: AG [[~ [IS_FIREABLE [Enolase]] | [[IS_FIREABLE [Transketolase2] & [IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [Hexokinase]]] | IS_FIREABLE [remove]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [remove] | [IS_FIREABLE [Transketolase2] & [IS_FIREABLE [Phosphoglycerate_kinase] | IS_FIREABLE [Hexokinase]]]] | ~ [IS_FIREABLE [Enolase]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.679sec

checking: EF [[[IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Enolase]] & ~ [[[IS_FIREABLE [TIM_backward] & IS_FIREABLE [TIM_backward]] | [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Glutathione_oxidation]]]]]]
normalized: E [true U [~ [[[IS_FIREABLE [TIM_backward] & IS_FIREABLE [TIM_backward]] | [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Glutathione_oxidation]]]] & [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Enolase]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.105sec

checking: AG [[~ [[~ [IS_FIREABLE [Transaldolase]] & [IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Phosphoglycerate_mutase]]]] & [IS_FIREABLE [Hexokinase] | [IS_FIREABLE [generate] | [IS_FIREABLE [Lactate_dehydrogenase] | IS_FIREABLE [Transketolase1]]]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [Hexokinase] | [IS_FIREABLE [generate] | [IS_FIREABLE [Lactate_dehydrogenase] | IS_FIREABLE [Transketolase1]]]] & ~ [[[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Phosphoglycerate_mutase]] & ~ [IS_FIREABLE [Transaldolase]]]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.902sec

checking: EF [[~ [[~ [IS_FIREABLE [GAP_dehydrogenase]] | [IS_FIREABLE [TIM_forward] | IS_FIREABLE [TIM_backward]]]] & [[~ [IS_FIREABLE [Phosphoclucose_isomerase]] | [IS_FIREABLE [Transaldolase] | IS_FIREABLE [generate]]] & IS_FIREABLE [GAP_dehydrogenase]]]]
normalized: E [true U [[IS_FIREABLE [GAP_dehydrogenase] & [~ [IS_FIREABLE [Phosphoclucose_isomerase]] | [IS_FIREABLE [Transaldolase] | IS_FIREABLE [generate]]]] & ~ [[[IS_FIREABLE [TIM_forward] | IS_FIREABLE [TIM_backward]] | ~ [IS_FIREABLE [GAP_dehydrogenase]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.013sec

checking: AG [[[~ [[IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Transketolase2]]] & [[IS_FIREABLE [remove] & IS_FIREABLE [TIM_backward]] | [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Phosphoglycerate_mutase]]]] | ~ [IS_FIREABLE [Enolase]]]]
normalized: ~ [E [true U ~ [[~ [IS_FIREABLE [Enolase]] | [[[IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Phosphoglycerate_mutase]] | [IS_FIREABLE [remove] & IS_FIREABLE [TIM_backward]]] & ~ [[IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Transketolase2]]]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0010N0000000010-ReachabilityFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.510sec


Total processing time: 0m14.376sec


BK_STOP 1465039015779

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

12435
iterations count:1541 (70), effective:367 (16)

initing FirstDep: 0m 0.000sec


iterations count:629 (28), effective:121 (5)

iterations count:629 (28), effective:121 (5)

iterations count:630 (28), effective:121 (5)

iterations count:631 (28), effective:122 (5)

iterations count:699 (31), effective:130 (5)

iterations count:630 (28), effective:121 (5)

iterations count:72 (3), effective:20 (0)

iterations count:837 (38), effective:164 (7)

iterations count:932 (42), effective:182 (8)

iterations count:361 (16), effective:79 (3)

iterations count:849 (38), effective:172 (7)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0010N0000000010"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/root/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0010N0000000010.tgz
mv GPPP-PT-C0010N0000000010 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0010N0000000010, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r221su-smll-146468027700495"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;