Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................................................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is GPPP-PT-C0001N0000000100, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r221su-smll-146468027600459
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1465033985189


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: GPPP_PT_C0001N0000000100
(NrP: 33 NrTr: 22 NrArc: 83)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 3.619sec


RS generation: 0m 0.141sec


-> reachability set: #nodes 1358 (1.4e+03) #states 145,476,966 (8)



starting MCC model checker
--------------------------

checking: EF [IS_FIREABLE [Pyruvate_kinase]]
normalized: E [true U IS_FIREABLE [Pyruvate_kinase]]

-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.039sec

checking: EF [~ [~ [IS_FIREABLE [remove]]]]
normalized: E [true U IS_FIREABLE [remove]]

-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.070sec

checking: EF [[IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [Transketolase1]]]
normalized: E [true U [IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [Transketolase1]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: AG [[IS_FIREABLE [GAP_dehydrogenase] | ~ [~ [~ [IS_FIREABLE [Lactate_dehydrogenase]]]]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [GAP_dehydrogenase] | ~ [IS_FIREABLE [Lactate_dehydrogenase]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.044sec

checking: AG [~ [~ [[[IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Transketolase2]] | ~ [IS_FIREABLE [Pyruvate_kinase]]]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Transketolase2]] | ~ [IS_FIREABLE [Pyruvate_kinase]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.020sec

checking: AG [[~ [IS_FIREABLE [remove]] | [IS_FIREABLE [Ru5P_epimerase] & ~ [[IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Transketolase2]]]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [Ru5P_epimerase] & ~ [[IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Transketolase2]]]] | ~ [IS_FIREABLE [remove]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: AG [[[~ [IS_FIREABLE [Enolase]] & [~ [IS_FIREABLE [Glutathione_reductose]] | ~ [IS_FIREABLE [Pyruvate_kinase]]]] | IS_FIREABLE [Glutathione_reductose]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [Glutathione_reductose] | [[~ [IS_FIREABLE [Glutathione_reductose]] | ~ [IS_FIREABLE [Pyruvate_kinase]]] & ~ [IS_FIREABLE [Enolase]]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.093sec

checking: EF [[~ [[[IS_FIREABLE [Transaldolase] | IS_FIREABLE [Phosphofructokinase]] | IS_FIREABLE [Aldolase]]] & [~ [~ [IS_FIREABLE [Pyruvate_kinase]]] | IS_FIREABLE [Transketolase2]]]]
normalized: E [true U [[IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [Transketolase2]] & ~ [[IS_FIREABLE [Aldolase] | [IS_FIREABLE [Transaldolase] | IS_FIREABLE [Phosphofructokinase]]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.014sec

checking: EF [[[[IS_FIREABLE [Transaldolase] | IS_FIREABLE [Lactate_dehydrogenase]] | [IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Lactate_dehydrogenase]]] & IS_FIREABLE [Pyruvate_kinase]]]
normalized: E [true U [IS_FIREABLE [Pyruvate_kinase] & [[IS_FIREABLE [Transaldolase] | IS_FIREABLE [Lactate_dehydrogenase]] | [IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Lactate_dehydrogenase]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.111sec

checking: AG [~ [[[IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [Lactate_dehydrogenase]] & [[IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [TIM_forward]] | ~ [IS_FIREABLE [TIM_backward]]]]]]
normalized: ~ [E [true U [[[IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [TIM_forward]] | ~ [IS_FIREABLE [TIM_backward]]] & [IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [Lactate_dehydrogenase]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.057sec

checking: EF [~ [[[[IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Glutathione_oxidation]] | ~ [IS_FIREABLE [remove]]] | [~ [IS_FIREABLE [TIM_backward]] | [IS_FIREABLE [Transketolase2] & IS_FIREABLE [Lactate_dehydrogenase]]]]]]
normalized: E [true U ~ [[[~ [IS_FIREABLE [TIM_backward]] | [IS_FIREABLE [Transketolase2] & IS_FIREABLE [Lactate_dehydrogenase]]] | [~ [IS_FIREABLE [remove]] | [IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Glutathione_oxidation]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.008sec

checking: EF [[IS_FIREABLE [remove] & [[[IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Phosphoglycerate_kinase]] & [IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [TIM_backward]]] & IS_FIREABLE [Transketolase2]]]]
normalized: E [true U [IS_FIREABLE [remove] & [IS_FIREABLE [Transketolase2] & [[IS_FIREABLE [Glutathione_reductose] | IS_FIREABLE [Phosphoglycerate_kinase]] & [IS_FIREABLE [Pyruvate_kinase] | IS_FIREABLE [TIM_backward]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.011sec

checking: EF [[[[[IS_FIREABLE [TIM_forward] | IS_FIREABLE [Transketolase1]] | [IS_FIREABLE [Phosphoglycerate_kinase] & IS_FIREABLE [Enolase]]] | ~ [IS_FIREABLE [Enolase]]] & IS_FIREABLE [remove]]]
normalized: E [true U [IS_FIREABLE [remove] & [[[IS_FIREABLE [Phosphoglycerate_kinase] & IS_FIREABLE [Enolase]] | [IS_FIREABLE [TIM_forward] | IS_FIREABLE [Transketolase1]]] | ~ [IS_FIREABLE [Enolase]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: AG [[[[[IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [TIM_backward]] & [IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Ru5P_isomerase]]] | [[IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [remove]] | ~ [IS_FIREABLE [Lactate_dehydrogenase]]]] | ~ [IS_FIREABLE [Glutathione_reductose]]]]
normalized: ~ [E [true U ~ [[~ [IS_FIREABLE [Glutathione_reductose]] | [[~ [IS_FIREABLE [Lactate_dehydrogenase]] | [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [remove]]] | [[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Ru5P_isomerase]] & [IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [TIM_backward]]]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.059sec

checking: EF [[[[[IS_FIREABLE [Transketolase1] | IS_FIREABLE [TIM_backward]] & [IS_FIREABLE [TIM_forward] | IS_FIREABLE [Ru5P_isomerase]]] & [IS_FIREABLE [Lactate_dehydrogenase] & [IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Hexokinase]]]] & ~ [IS_FIREABLE [TIM_forward]]]]
normalized: E [true U [~ [IS_FIREABLE [TIM_forward]] & [[IS_FIREABLE [Lactate_dehydrogenase] & [IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Hexokinase]]] & [[IS_FIREABLE [TIM_forward] | IS_FIREABLE [Ru5P_isomerase]] & [IS_FIREABLE [Transketolase1] | IS_FIREABLE [TIM_backward]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: EF [[[IS_FIREABLE [Ru5P_epimerase] & [[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Pyruvate_kinase]] & [IS_FIREABLE [Aldolase] | IS_FIREABLE [Hexokinase]]]] & [~ [[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Ru5P_epimerase]]] & [[IS_FIREABLE [Hexokinase] | IS_FIREABLE [TIM_backward]] | IS_FIREABLE [Glutathione_oxidation]]]]]
normalized: E [true U [[[IS_FIREABLE [Glutathione_oxidation] | [IS_FIREABLE [Hexokinase] | IS_FIREABLE [TIM_backward]]] & ~ [[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Ru5P_epimerase]]]] & [IS_FIREABLE [Ru5P_epimerase] & [[IS_FIREABLE [Aldolase] | IS_FIREABLE [Hexokinase]] & [IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Pyruvate_kinase]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec


Total processing time: 0m 5.654sec


BK_STOP 1465033990878

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.001sec

1092 1181 1384 1145 1128 1217 1330 1177 1171 1200 1709 1811 1769 1769 1783
iterations count:15790 (717), effective:3705 (168)

initing FirstDep: 0m 0.000sec


iterations count:171 (7), effective:38 (1)

iterations count:359 (16), effective:85 (3)

iterations count:216 (9), effective:38 (1)

iterations count:206 (9), effective:45 (2)

iterations count:359 (16), effective:85 (3)

iterations count:701 (31), effective:220 (10)

iterations count:171 (7), effective:38 (1)

iterations count:227 (10), effective:52 (2)

iterations count:292 (13), effective:74 (3)

iterations count:359 (16), effective:85 (3)

iterations count:426 (19), effective:100 (4)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000000100"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/root/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000000100.tgz
mv GPPP-PT-C0001N0000000100 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0001N0000000100, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r221su-smll-146468027600459"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;