Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is GPPP-PT-C0001N0000000001, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r221su-smll-146468027600436
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-0
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-1
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-10
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-11
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-12
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-13
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-14
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-15
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-2
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-3
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-4
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-5
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-6
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-7
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-8
FORMULA_NAME GPPP-PT-C0001N0000000001-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1465033709187


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: GPPP_PT_C0001N0000000001
(NrP: 33 NrTr: 22 NrArc: 83)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 3.865sec


RS generation: 0m 0.014sec


-> reachability set: #nodes 561 (5.6e+02) #states 10,380 (4)



starting MCC model checker
--------------------------

checking: AG [EF [IS_FIREABLE [Transketolase2]]]
normalized: ~ [E [true U ~ [E [true U IS_FIREABLE [Transketolase2]]]]]

-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.010sec

checking: EF [EX [IS_FIREABLE [generate]]]
normalized: E [true U EX [IS_FIREABLE [generate]]]

.-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.007sec

checking: EG [EF [AG [IS_FIREABLE [Transaldolase]]]]
normalized: EG [E [true U ~ [E [true U ~ [IS_FIREABLE [Transaldolase]]]]]]

.
EG iterations: 1
-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: ~ [~ [EX [~ [IS_FIREABLE [Glutathione_reductose]]]]]
normalized: EX [~ [IS_FIREABLE [Glutathione_reductose]]]

.-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: IS_FIREABLE [Hexokinase]
normalized: IS_FIREABLE [Hexokinase]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[EF [~ [IS_FIREABLE [generate]]] & AX [~ [IS_FIREABLE [generate]]]]]
normalized: ~ [E [true U ~ [[~ [EX [IS_FIREABLE [generate]]] & E [true U ~ [IS_FIREABLE [generate]]]]]]]

.-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AF [~ [EF [[IS_FIREABLE [remove] & IS_FIREABLE [Enolase]]]]]
normalized: ~ [EG [E [true U [IS_FIREABLE [remove] & IS_FIREABLE [Enolase]]]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AX [E [~ [IS_FIREABLE [Phosphoglycerate_mutase]] U [IS_FIREABLE [Transketolase2] & IS_FIREABLE [Phosphofructokinase]]]]
normalized: ~ [EX [~ [E [~ [IS_FIREABLE [Phosphoglycerate_mutase]] U [IS_FIREABLE [Transketolase2] & IS_FIREABLE [Phosphofructokinase]]]]]]

.-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: E [~ [~ [~ [IS_FIREABLE [Transaldolase]]]] U AG [[IS_FIREABLE [Glutathione_reductose] & IS_FIREABLE [Glutathione_oxidation]]]]
normalized: E [~ [IS_FIREABLE [Transaldolase]] U ~ [E [true U ~ [[IS_FIREABLE [Glutathione_reductose] & IS_FIREABLE [Glutathione_oxidation]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: [E [IS_FIREABLE [Transketolase1] U AF [IS_FIREABLE [Aldolase]]] | IS_FIREABLE [remove]]
normalized: [IS_FIREABLE [remove] | E [IS_FIREABLE [Transketolase1] U ~ [EG [~ [IS_FIREABLE [Aldolase]]]]]]

.................
EG iterations: 17
-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.010sec

checking: EF [[AG [[IS_FIREABLE [Transketolase1] & IS_FIREABLE [Aldolase]]] & EF [[IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Ru5P_isomerase]]]]]
normalized: E [true U [E [true U [IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Ru5P_isomerase]]] & ~ [E [true U ~ [[IS_FIREABLE [Transketolase1] & IS_FIREABLE [Aldolase]]]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.004sec

checking: [AG [EF [~ [IS_FIREABLE [Glutathione_reductose]]]] & [EG [~ [IS_FIREABLE [Ru5P_epimerase]]] & A [~ [IS_FIREABLE [GAP_dehydrogenase]] U ~ [IS_FIREABLE [Transketolase1]]]]]
normalized: [[[~ [EG [IS_FIREABLE [Transketolase1]]] & ~ [E [IS_FIREABLE [Transketolase1] U [IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [Transketolase1]]]]] & EG [~ [IS_FIREABLE [Ru5P_epimerase]]]] & ~ [E [true U ~ [E [true U ~ [IS_FIREABLE [Glutathione_reductose]]]]]]]

.......................
EG iterations: 23
.............
EG iterations: 13
-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.009sec

checking: [AF [E [IS_FIREABLE [TIM_forward] U IS_FIREABLE [Transketolase2]]] & ~ [AX [[[IS_FIREABLE [Transketolase2] | IS_FIREABLE [Phosphoclucose_isomerase]] & [IS_FIREABLE [Transketolase1] & IS_FIREABLE [Phosphoglycerate_kinase]]]]]]
normalized: [EX [~ [[[IS_FIREABLE [Transketolase2] | IS_FIREABLE [Phosphoclucose_isomerase]] & [IS_FIREABLE [Transketolase1] & IS_FIREABLE [Phosphoglycerate_kinase]]]]] & ~ [EG [~ [E [IS_FIREABLE [TIM_forward] U IS_FIREABLE [Transketolase2]]]]]]

..........................................
EG iterations: 42
.-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.025sec

checking: ~ [[[AG [IS_FIREABLE [generate]] & EX [[IS_FIREABLE [Transketolase2] | IS_FIREABLE [Transaldolase]]]] | ~ [~ [[[IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Glutathione_oxidation]] & IS_FIREABLE [Transaldolase]]]]]]
normalized: ~ [[[IS_FIREABLE [Transaldolase] & [IS_FIREABLE [Phosphofructokinase] | IS_FIREABLE [Glutathione_oxidation]]] | [EX [[IS_FIREABLE [Transketolase2] | IS_FIREABLE [Transaldolase]]] & ~ [E [true U ~ [IS_FIREABLE [generate]]]]]]]

.-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: ~ [[E [[IS_FIREABLE [Phosphofructokinase] & IS_FIREABLE [Phosphoglycerate_kinase]] U [IS_FIREABLE [Ru5P_epimerase] | IS_FIREABLE [Ru5P_isomerase]]] | ~ [E [IS_FIREABLE [Transketolase1] U IS_FIREABLE [Hexokinase]]]]]
normalized: ~ [[~ [E [IS_FIREABLE [Transketolase1] U IS_FIREABLE [Hexokinase]]] | E [[IS_FIREABLE [Phosphofructokinase] & IS_FIREABLE [Phosphoglycerate_kinase]] U [IS_FIREABLE [Ru5P_epimerase] | IS_FIREABLE [Ru5P_isomerase]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: [[EX [[~ [IS_FIREABLE [Phosphoglycerate_mutase]] | [IS_FIREABLE [Transaldolase] | IS_FIREABLE [Hexokinase]]]] | [EX [IS_FIREABLE [Glutathione_reductose]] | IS_FIREABLE [Ru5P_epimerase]]] | A [EX [IS_FIREABLE [Hexokinase]] U AX [IS_FIREABLE [remove]]]]
normalized: [[~ [EG [EX [~ [IS_FIREABLE [remove]]]]] & ~ [E [EX [~ [IS_FIREABLE [remove]]] U [~ [EX [IS_FIREABLE [Hexokinase]]] & EX [~ [IS_FIREABLE [remove]]]]]]] | [[IS_FIREABLE [Ru5P_epimerase] | EX [IS_FIREABLE [Glutathione_reductose]]] | EX [[[IS_FIREABLE [Transaldolase] | IS_FIREABLE [Hexokinase]] | ~ [IS_FIREABLE [Phosphoglycerate_mutase]]]]]]

................
EG iterations: 10
-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000000001-CTLFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.014sec


Total processing time: 0m 5.447sec


BK_STOP 1465033714669

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:446 (20), effective:99 (4)

initing FirstDep: 0m 0.000sec


iterations count:396 (18), effective:97 (4)

iterations count:399 (18), effective:97 (4)

iterations count:25 (1), effective:1 (0)

iterations count:26 (1), effective:1 (0)

iterations count:399 (18), effective:97 (4)

iterations count:61 (2), effective:10 (0)

iterations count:22 (1), effective:0 (0)

iterations count:28 (1), effective:1 (0)

iterations count:26 (1), effective:1 (0)

iterations count:674 (30), effective:167 (7)

iterations count:24 (1), effective:1 (0)

iterations count:156 (7), effective:32 (1)

iterations count:26 (1), effective:1 (0)

iterations count:55 (2), effective:9 (0)

iterations count:22 (1), effective:0 (0)

iterations count:78 (3), effective:17 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000000001"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/root/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000000001.tgz
mv GPPP-PT-C0001N0000000001 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0001N0000000001, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r221su-smll-146468027600436"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;