Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
=====================================================================
Generated by BenchKit 2-2979
Executing tool tapaalSEQ
Input is S_Angiogenesis-PT-50, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r174kn-ebro-146433149100070
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1464848979311

---> tapaalSEQ --- TAPAAL Sequential

*******************************************************
* TAPAAL Sequential verifying ReachabilityCardinality *
*******************************************************

timeout 5 verifypn -n -s OverApprox -x 1 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-0: EF ( (1 <= "KdStarGStarP3") )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 2 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-1: EF ( (not(((3 <= "Gab1") or ("KdStarPgStar" <= "KdStarGStarP3"))) and (("KdStarGStarP3kStarP3" <= "Pten") or not((2 <= "Enz")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 3 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-2: not EF not ( ((("AktStar" <= "KdStarPgStar") or ((3 <= "KdStarGStarP3kStar") or ("Pip3" <= "KdStarPgStar"))) and ((("KdStarGStarP3kStarP3" <= "KdStarG") or (2 <= "PtP2")) or (3 <= "Pip2"))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 4 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-3: EF ( (not(not(("Enz" <= "KdStarGStarPgP3"))) and ((("KdStarPgStar" <= "GStarPgP3") and (1 <= "GStarP3")) or ("KdStarPgStar" <= "KdStarGStarP3kP3"))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 5 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-4: EF ( (1 <= "GStarPgP3") )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 6 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-5: EF ( (not(not((2 <= "PtP3"))) and ("KdStarGStarPgStarP3P2" <= "KdStarGStarPgStarP3P2")) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 7 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-6: EF ( not((not((1 <= "GStarP3kP3")) or not((2 <= "KdStarPg")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 8 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-7: not EF not ( (2 <= "Gab1") )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 9 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-8: EF ( (((("Gab1" <= "KdStarGStarP3kStarP3P2") and (2 <= "KdStar")) and ((3 <= "PtP3P2") or ("KdStarGStarPgStar" <= "PtP3P2"))) or (("Akt" <= "KdStarPgStar") or (("KdStarGStarPgP3" <= "GP3") and (2 <= "KdStarGStarPgStarP3")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 10 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-9: EF ( ((("Pg" <= "Pip3") or ((2 <= "KdStarGStarPgP3") and (2 <= "PtP3"))) and ("KdStarGP3" <= "Pip2")) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 11 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-10: not EF not ( ("GStarPgP3" <= "KdStarPgStar") )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 12 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-11: EF ( not(("KdStarGP3" <= "Pip2")) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 13 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-12: not EF not ( (not((("KdStarGStar" <= "KdStar") and (2 <= "KdStarGStarPgP3"))) or (("Akt" <= "KdStarGP3") or not(("PtP2" <= "KdStarGStarPgStarP3P2")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-13: not EF not ( not(not(("KdStarPgStarP2" <= "P3k"))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 15 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-14: EF ( not((2 <= "Pg")) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 16 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-15: EF ( (((("DAG" <= "KdStarGStarPgStar") and ("PtP3P2" <= "Pten")) and ((2 <= "GStarP3kP3") and ("GStarPgP3" <= "KdStarGStarP3kP3"))) and not((("KdStarGStarP3kStarP3P2" <= "GStarP3") or (1 <= "KdStarGStar")))) )


Unable to decide if query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 1 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-0: EF ( (1 <= "KdStarGStarP3") )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 2 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-1: EF ( (not(((3 <= "Gab1") or ("KdStarPgStar" <= "KdStarGStarP3"))) and (("KdStarGStarP3kStarP3" <= "Pten") or not((2 <= "Enz")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 3 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-2: not EF not ( ((("AktStar" <= "KdStarPgStar") or ((3 <= "KdStarGStarP3kStar") or ("Pip3" <= "KdStarPgStar"))) and ((("KdStarGStarP3kStarP3" <= "KdStarG") or (2 <= "PtP2")) or (3 <= "Pip2"))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 40 verifypn -n -d -r 1 -x 4 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-3: EF ( (not(not(("Enz" <= "KdStarGStarPgP3"))) and ((("KdStarPgStar" <= "GStarPgP3") and (1 <= "GStarP3")) or ("KdStarPgStar" <= "KdStarGStarP3kP3"))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 5 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-4: EF ( (1 <= "GStarPgP3") )

timeout 40 verifypn -n -d -r 1 -x 6 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-5: EF ( (not(not((2 <= "PtP3"))) and ("KdStarGStarPgStarP3P2" <= "KdStarGStarPgStarP3P2")) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 7 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-6: EF ( not((not((1 <= "GStarP3kP3")) or not((2 <= "KdStarPg")))) )

timeout 40 verifypn -n -d -r 1 -x 8 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-7: not EF not ( (2 <= "Gab1") )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 40 verifypn -n -d -r 1 -x 9 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-8: EF ( (((("Gab1" <= "KdStarGStarP3kStarP3P2") and (2 <= "KdStar")) and ((3 <= "PtP3P2") or ("KdStarGStarPgStar" <= "PtP3P2"))) or (("Akt" <= "KdStarPgStar") or (("KdStarGStarPgP3" <= "GP3") and (2 <= "KdStarGStarPgStarP3")))) )

timeout 40 verifypn -n -d -r 1 -x 10 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-9: EF ( ((("Pg" <= "Pip3") or ((2 <= "KdStarGStarPgP3") and (2 <= "PtP3"))) and ("KdStarGP3" <= "Pip2")) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 11 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-10: not EF not ( ("GStarPgP3" <= "KdStarPgStar") )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 40 verifypn -n -d -r 1 -x 12 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-11: EF ( not(("KdStarGP3" <= "Pip2")) )

timeout 40 verifypn -n -d -r 1 -x 13 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-12: not EF not ( (not((("KdStarGStar" <= "KdStar") and (2 <= "KdStarGStarPgP3"))) or (("Akt" <= "KdStarGP3") or not(("PtP2" <= "KdStarGStarPgStarP3P2")))) )

timeout 40 verifypn -n -d -r 1 -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-13: not EF not ( not(not(("KdStarPgStarP2" <= "P3k"))) )

timeout 40 verifypn -n -d -r 1 -x 15 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-14: EF ( not((2 <= "Pg")) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 16 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-15: EF ( (((("DAG" <= "KdStarGStarPgStar") and ("PtP3P2" <= "Pten")) and ((2 <= "GStarP3kP3") and ("GStarPgP3" <= "KdStarGStarP3kP3"))) and not((("KdStarGStarP3kStarP3P2" <= "GStarP3") or (1 <= "KdStarGStar")))) )

timeout 30 verifypn -n -d -r 1 -s BFS -x 5 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-4: EF ( (1 <= "GStarPgP3") )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 30 verifypn -n -d -r 1 -s BFS -x 7 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-6: EF ( not((not((1 <= "GStarP3kP3")) or not((2 <= "KdStarPg")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 30 verifypn -n -d -r 1 -s BFS -x 9 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-8: EF ( (((("Gab1" <= "KdStarGStarP3kStarP3P2") and (2 <= "KdStar")) and ((3 <= "PtP3P2") or ("KdStarGStarPgStar" <= "PtP3P2"))) or (("Akt" <= "KdStarPgStar") or (("KdStarGStarPgP3" <= "GP3") and (2 <= "KdStarGStarPgStarP3")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 30 verifypn -n -d -r 1 -s BFS -x 12 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-11: EF ( not(("KdStarGP3" <= "Pip2")) )

timeout 30 verifypn -n -d -r 1 -s BFS -x 13 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-12: not EF not ( (not((("KdStarGStar" <= "KdStar") and (2 <= "KdStarGStarPgP3"))) or (("Akt" <= "KdStarGP3") or not(("PtP2" <= "KdStarGStarPgStarP3P2")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 30 verifypn -n -d -r 1 -s BFS -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-13: not EF not ( not(not(("KdStarPgStarP2" <= "P3k"))) )

timeout 30 verifypn -n -d -r 1 -s BFS -x 16 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-15: EF ( (((("DAG" <= "KdStarGStarPgStar") and ("PtP3P2" <= "Pten")) and ((2 <= "GStarP3kP3") and ("GStarPgP3" <= "KdStarGStarP3kP3"))) and not((("KdStarGStarP3kStarP3P2" <= "GStarP3") or (1 <= "KdStarGStar")))) )

timeout 300 verifypn -n -d -r 1 -s DFS -x 12 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-11: EF ( not(("KdStarGP3" <= "Pip2")) )

timeout 300 verifypn -n -d -r 1 -s DFS -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-13: not EF not ( not(not(("KdStarPgStarP2" <= "P3k"))) )

timeout 300 verifypn -n -d -r 1 -s DFS -x 16 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-15: EF ( (((("DAG" <= "KdStarGStarPgStar") and ("PtP3P2" <= "Pten")) and ((2 <= "GStarP3kP3") and ("GStarPgP3" <= "KdStarGStarP3kP3"))) and not((("KdStarGStarP3kStarP3P2" <= "GStarP3") or (1 <= "KdStarGStar")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 7200 verifypn -n -d -r 1 -s DFS -x 12 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-11: EF ( not(("KdStarGP3" <= "Pip2")) )


timeout 7200 verifypn -n -d -r 1 -s DFS -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-13: not EF not ( not(not(("KdStarPgStarP2" <= "P3k"))) )


BK_STOP 1464850949285

--------------------
content from stderr:

terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
/home/mcc/BenchKit/tapaal.sh: line 42: 456 Aborted timeout $1 $VERIFYPN $3 "-x" $QUERY model.pnml $4
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
/home/mcc/BenchKit/tapaal.sh: line 42: 459 Aborted timeout $1 $VERIFYPN $3 "-x" $QUERY model.pnml $4

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-50"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="tapaalSEQ"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-50.tgz
mv S_Angiogenesis-PT-50 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool tapaalSEQ"
echo " Input is S_Angiogenesis-PT-50, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r174kn-ebro-146433149100070"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;