Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............
=====================================================================
Generated by BenchKit 2-2979
Executing tool tapaalSEQ
Input is S_Angiogenesis-PT-25, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r174kn-ebro-146433149100061
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1464848965275

---> tapaalSEQ --- TAPAAL Sequential

*******************************************************
* TAPAAL Sequential verifying ReachabilityCardinality *
*******************************************************

timeout 5 verifypn -n -s OverApprox -x 1 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-0: not EF not ( not(not((("KdStarGStarP3kStarP3" <= "P3k") or (1 <= "Pg")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 2 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-1: EF ( (2 <= "GP3") )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 3 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-2: not EF not ( not(not(((1 <= "GStarPgP3") or ("GP3" <= "Pg")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 4 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-3: EF ( ((((1 <= "KdStarGStarP3k") and ("KdStarGP3" <= "DAGE")) and not(("Pip2" <= "KdStarGStarPgStarP3"))) and not(not((1 <= "DAGE")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 5 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-4: not EF not ( (("KdStarGStarP3" <= "KdStarGStarPgStarP2") or not((("Gab1" <= "Pg") or (3 <= "DAG")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 6 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-5: EF ( (2 <= "KdStarGStarPgStarP3") )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 7 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-6: EF ( not(((("KdStarPgStar" <= "GStarP3kP3") and (2 <= "P3k")) or (("PtP3" <= "KdStarPgStarP2") or (1 <= "GStarP3")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 8 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-7: EF ( ((("KdStarGP3" <= "KdStarGStarP3kStarP3P2") or (("KdStarGStar" <= "P3k") and (3 <= "GStarPgP3"))) and (2 <= "KdStarGStarP3kP3")) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 9 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-8: not EF not ( ((("DAG" <= "DAGE") or not(("KdStarG" <= "GP3"))) or not(not(("KdStarGStarP3" <= "DAGE")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 10 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-9: EF ( (3 <= "KdStarGStarP3k") )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 11 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-10: EF ( ((((2 <= "KdStarPg") and (2 <= "Enz")) or ("GStarPgP3" <= "KdStarGStarPgStarP3")) and ((("KdStarGStarP3k" <= "Gab1") or ("GStarP3kP3" <= "KdStarGStarP3")) and not((1 <= "Pten")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 12 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-11: not EF not ( not((not((2 <= "KdStarGStarP3kStar")) and (("AktStar" <= "KdStarGStarP3kStarP3P2") and (2 <= "KdStarGStarPgP3")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 13 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-12: not EF not ( ((((3 <= "KdStar") or ("KdStar" <= "Akt")) or (("KdStarGStarP3kStarP2" <= "KdStarGStarPgStarP3") and (2 <= "KdStarPgStarP2"))) or ((1 <= "PtP3P2") and (("KdStarGStarP3k" <= "KdStar") or ("KdStarGStarPgStar" <= "AktStar")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-13: not EF not ( ("PtP3P2" <= "Pten") )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 15 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-14: EF ( (not(("PtP3P2" <= "KdStarGStarP3kStarP3")) and (((1 <= "DAGE") or (2 <= "Gab1")) and ((3 <= "KdStarGStarP3") or (2 <= "KdStarGStarPgStar")))) )


Unable to decide if query is satisfied.


timeout 5 verifypn -n -s OverApprox -x 16 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-15: not EF not ( not((((1 <= "PtP2") and (3 <= "KdStarGStarP3kP3")) or (1 <= "KdStarGStarPgP3"))) )


Unable to decide if query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 1 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-0: not EF not ( not(not((("KdStarGStarP3kStarP3" <= "P3k") or (1 <= "Pg")))) )

timeout 40 verifypn -n -d -r 1 -x 2 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-1: EF ( (2 <= "GP3") )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 3 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-2: not EF not ( not(not(((1 <= "GStarPgP3") or ("GP3" <= "Pg")))) )

timeout 40 verifypn -n -d -r 1 -x 4 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-3: EF ( ((((1 <= "KdStarGStarP3k") and ("KdStarGP3" <= "DAGE")) and not(("Pip2" <= "KdStarGStarPgStarP3"))) and not(not((1 <= "DAGE")))) )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 5 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-4: not EF not ( (("KdStarGStarP3" <= "KdStarGStarPgStarP2") or not((("Gab1" <= "Pg") or (3 <= "DAG")))) )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 40 verifypn -n -d -r 1 -x 6 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-5: EF ( (2 <= "KdStarGStarPgStarP3") )

timeout 40 verifypn -n -d -r 1 -x 7 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-6: EF ( not(((("KdStarPgStar" <= "GStarP3kP3") and (2 <= "P3k")) or (("PtP3" <= "KdStarPgStarP2") or (1 <= "GStarP3")))) )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 8 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-7: EF ( ((("KdStarGP3" <= "KdStarGStarP3kStarP3P2") or (("KdStarGStar" <= "P3k") and (3 <= "GStarPgP3"))) and (2 <= "KdStarGStarP3kP3")) )

timeout 40 verifypn -n -d -r 1 -x 9 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-8: not EF not ( ((("DAG" <= "DAGE") or not(("KdStarG" <= "GP3"))) or not(not(("KdStarGStarP3" <= "DAGE")))) )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 40 verifypn -n -d -r 1 -x 10 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-9: EF ( (3 <= "KdStarGStarP3k") )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 11 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-10: EF ( ((((2 <= "KdStarPg") and (2 <= "Enz")) or ("GStarPgP3" <= "KdStarGStarPgStarP3")) and ((("KdStarGStarP3k" <= "Gab1") or ("GStarP3kP3" <= "KdStarGStarP3")) and not((1 <= "Pten")))) )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 12 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-11: not EF not ( not((not((2 <= "KdStarGStarP3kStar")) and (("AktStar" <= "KdStarGStarP3kStarP3P2") and (2 <= "KdStarGStarPgP3")))) )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 40 verifypn -n -d -r 1 -x 13 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-12: not EF not ( ((((3 <= "KdStar") or ("KdStar" <= "Akt")) or (("KdStarGStarP3kStarP2" <= "KdStarGStarPgStarP3") and (2 <= "KdStarPgStarP2"))) or ((1 <= "PtP3P2") and (("KdStarGStarP3k" <= "KdStar") or ("KdStarGStarPgStar" <= "AktStar")))) )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 40 verifypn -n -d -r 1 -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-13: not EF not ( ("PtP3P2" <= "Pten") )

timeout 40 verifypn -n -d -r 1 -x 15 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-14: EF ( (not(("PtP3P2" <= "KdStarGStarP3kStarP3")) and (((1 <= "DAGE") or (2 <= "Gab1")) and ((3 <= "KdStarGStarP3") or (2 <= "KdStarGStarPgStar")))) )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 40 verifypn -n -d -r 1 -x 16 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-15: not EF not ( not((((1 <= "PtP2") and (3 <= "KdStarGStarP3kP3")) or (1 <= "KdStarGStarPgP3"))) )

timeout 30 verifypn -n -d -r 1 -s BFS -x 1 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-0: not EF not ( not(not((("KdStarGStarP3kStarP3" <= "P3k") or (1 <= "Pg")))) )

timeout 30 verifypn -n -d -r 1 -s BFS -x 3 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-2: not EF not ( not(not(((1 <= "GStarPgP3") or ("GP3" <= "Pg")))) )

timeout 30 verifypn -n -d -r 1 -s BFS -x 6 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-5: EF ( (2 <= "KdStarGStarPgStarP3") )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 30 verifypn -n -d -r 1 -s BFS -x 8 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-7: EF ( ((("KdStarGP3" <= "KdStarGStarP3kStarP3P2") or (("KdStarGStar" <= "P3k") and (3 <= "GStarPgP3"))) and (2 <= "KdStarGStarP3kP3")) )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


timeout 30 verifypn -n -d -r 1 -s BFS -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-13: not EF not ( ("PtP3P2" <= "Pten") )

timeout 30 verifypn -n -d -r 1 -s BFS -x 16 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-15: not EF not ( not((((1 <= "PtP2") and (3 <= "KdStarGStarP3kP3")) or (1 <= "KdStarGStarPgP3"))) )

FORMULA Angiogenesis-PT-25-ReachabilityCardinality-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


timeout 300 verifypn -n -d -r 1 -s DFS -x 1 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-0: not EF not ( not(not((("KdStarGStarP3kStarP3" <= "P3k") or (1 <= "Pg")))) )

timeout 300 verifypn -n -d -r 1 -s DFS -x 3 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-2: not EF not ( not(not(((1 <= "GStarPgP3") or ("GP3" <= "Pg")))) )

timeout 300 verifypn -n -d -r 1 -s DFS -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-13: not EF not ( ("PtP3P2" <= "Pten") )

timeout 7200 verifypn -n -d -r 1 -s DFS -x 1 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-0: not EF not ( not(not((("KdStarGStarP3kStarP3" <= "P3k") or (1 <= "Pg")))) )


timeout 7200 verifypn -n -d -r 1 -s DFS -x 3 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-2: not EF not ( not(not(((1 <= "GStarPgP3") or ("GP3" <= "Pg")))) )


timeout 7200 verifypn -n -d -r 1 -s DFS -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-25-ReachabilityCardinality-13: not EF not ( ("PtP3P2" <= "Pten") )


BK_STOP 1464851652876

--------------------
content from stderr:

terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
/home/mcc/BenchKit/tapaal.sh: line 42: 447 Aborted timeout $1 $VERIFYPN $3 "-x" $QUERY model.pnml $4
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
/home/mcc/BenchKit/tapaal.sh: line 42: 450 Aborted timeout $1 $VERIFYPN $3 "-x" $QUERY model.pnml $4
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
/home/mcc/BenchKit/tapaal.sh: line 42: 454 Aborted timeout $1 $VERIFYPN $3 "-x" $QUERY model.pnml $4

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-25"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="tapaalSEQ"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-25.tgz
mv S_Angiogenesis-PT-25 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool tapaalSEQ"
echo " Input is S_Angiogenesis-PT-25, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r174kn-ebro-146433149100061"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;