Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..........................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_Angiogenesis-PT-15, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r173kn-ebro-146433144700043
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-15-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1464784865292


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityCardinality.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.101sec


RS generation: 2m33.905sec


-> reachability set: #nodes 648270 (6.5e+05) #states 1,115,538,966,669,107 (15)



starting MCC model checker
--------------------------

checking: EF [3<=KdStarGStarPgStarP2]
normalized: E [true U 3<=KdStarGStarPgStarP2]

abstracting: (3<=KdStarGStarPgStarP2) states: 23,020,467,993,714 (13)
-> the formula is TRUE

FORMULA Angiogenesis-PT-15-ReachabilityCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 15m25.806sec

checking: AG [3<=Pip2]
normalized: ~ [E [true U ~ [3<=Pip2]]]

abstracting: (3<=Pip2) states: 148,187,806,970,077 (14)
-> the formula is FALSE

FORMULA Angiogenesis-PT-15-ReachabilityCardinality-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 3m58.932sec

checking: AG [~ [3<=AktP3]]
normalized: ~ [E [true U 3<=AktP3]]

abstracting: (3<=AktP3) states: 118,963,416,268,051 (14)
-> the formula is FALSE

FORMULA Angiogenesis-PT-15-ReachabilityCardinality-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 12m13.333sec

checking: EF [P3k<=KdStarPg]
normalized: E [true U P3k<=KdStarPg]

abstracting: (P3k<=KdStarPg) states: 1,604,742,708,480 (12)
-> the formula is TRUE

FORMULA Angiogenesis-PT-15-ReachabilityCardinality-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 15m22.037sec

checking: EF [~ [KdStarGStarP3<=Akt]]
normalized: E [true U ~ [KdStarGStarP3<=Akt]]

abstracting: (KdStarGStarP3<=Akt) states: 1,085,918,792,062,116 (15)

before gc: list nodes free: 694074

after gc: idd nodes used:2303320, unused:61696680; list nodes free:506750001

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

3472 7642 9876 7774 23444 42756 64193 57311 120540 495661 687343 708357 694302 681596 670328 660953 653843 648258
iterations count:18034 (281), effective:1362 (21)

initing FirstDep: 0m 0.000sec

519733 960397 956936 845406 738406
iterations count:5108 (79), effective:384 (6)
681255 714202 658006
iterations count:3475 (54), effective:284 (4)
955586 892090 690769
iterations count:3361 (52), effective:248 (3)
238478 307229 445467 561994 544145 554945 542089 593332 607418 700403 692972 695851 693017 720240 716008
iterations count:15351 (239), effective:1255 (19)
733761

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-15"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-15.tgz
mv S_Angiogenesis-PT-15 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-15, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r173kn-ebro-146433144700043"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;