Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..............
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_Angiogenesis-PT-10, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r173kn-ebro-146433144700034
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1464784852729


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityCardinality.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_10
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.294sec


RS generation: 0m16.748sec


-> reachability set: #nodes 128274 (1.3e+05) #states 822,645,885,495 (11)



starting MCC model checker
--------------------------

checking: EF [3<=AktP3]
normalized: E [true U 3<=AktP3]

abstracting: (3<=AktP3) states: 41,865,712,260 (10)
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m 4.096sec

checking: EF [~ [3<=P3k]]
normalized: E [true U ~ [3<=P3k]]

abstracting: (3<=P3k) states: 817,995,718,972 (11)
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m11.881sec

checking: EF [~ [KdStarGP3<=KdStarGStarPg]]
normalized: E [true U ~ [KdStarGP3<=KdStarGStarPg]]

abstracting: (KdStarGP3<=KdStarGStarPg) states: 716,674,205,390 (11)
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m 2.943sec

checking: AG [KdStarGStarP3kStarP2<=Akt]
normalized: ~ [E [true U ~ [KdStarGStarP3kStarP2<=Akt]]]

abstracting: (KdStarGStarP3kStarP2<=Akt) states: 802,901,242,105 (11)
-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 3m50.109sec

checking: AG [[1<=Pip2 | ~ [1<=KdStarGStar]]]
normalized: ~ [E [true U ~ [[1<=Pip2 | ~ [1<=KdStarGStar]]]]]

abstracting: (1<=KdStarGStar) states: 365,203,299,954 (11)
abstracting: (1<=Pip2) states: 368,924,277,954 (11)
-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m 0.836sec

checking: AG [~ [Akt<=KdStarGStarP3kStarP2]]
normalized: ~ [E [true U Akt<=KdStarGStarP3kStarP2]]

abstracting: (Akt<=KdStarGStarP3kStarP2) states: 99,855,569,892 (10)
-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 3m30.056sec

checking: AG [KdStarGStarPgStarP3<=AktP3]
normalized: ~ [E [true U ~ [KdStarGStarPgStarP3<=AktP3]]]

abstracting: (KdStarGStarPgStarP3<=AktP3) states: 712,377,876,030 (11)
-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m 1.787sec

checking: AG [[[3<=GStarPgP3 | 2<=P3k] | 2<=Pg]]
normalized: ~ [E [true U ~ [[2<=Pg | [3<=GStarPgP3 | 2<=P3k]]]]]

abstracting: (2<=P3k) states: 821,813,315,242 (11)
abstracting: (3<=GStarPgP3) states: 16,954,682,307 (10)
abstracting: (2<=Pg) states: 776,642,401,686 (11)
-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m57.970sec

checking: EF [[2<=KdStarGStarPgP3 | P3k<=KdStarGStarPgStar]]
normalized: E [true U [2<=KdStarGStarPgP3 | P3k<=KdStarGStarPgStar]]

abstracting: (P3k<=KdStarGStarPgStar) states: 311,218,557 (8)
abstracting: (2<=KdStarGStarPgP3) states: 30,441,494,561 (10)
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 3m 8.600sec

checking: AG [[KdStarGStarP3kStarP3<=KdStarGStarP3kP3 | Enz<=KdStarGStarPgStarP2]]
normalized: ~ [E [true U ~ [[KdStarGStarP3kStarP3<=KdStarGStarP3kP3 | Enz<=KdStarGStarPgStarP2]]]]

abstracting: (Enz<=KdStarGStarPgStarP2) states: 1,013,298 (6)
abstracting: (KdStarGStarP3kStarP3<=KdStarGStarP3kP3) states: 681,258,533,230 (11)
-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m50.604sec

checking: EF [[~ [[3<=Pg | AktP3<=P3k]] & [~ [1<=P3k] | 2<=GStarP3kP3]]]
normalized: E [true U [[2<=GStarP3kP3 | ~ [1<=P3k]] & ~ [[3<=Pg | AktP3<=P3k]]]]

abstracting: (AktP3<=P3k) states: 821,916,937,658 (11)
abstracting: (3<=Pg) states: 711,274,715,013 (11)
abstracting: (1<=P3k) states: 822,568,558,183 (11)
abstracting: (2<=GStarP3kP3) states: 80,160,051,429 (10)
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m23.042sec

checking: EF [~ [[[KdStarGStarP3<=KdStarPg | 3<=DAG] | [KdStarGStar<=Pg & KdStarGStar<=KdStarGStarPgStar]]]]
normalized: E [true U ~ [[[KdStarGStarP3<=KdStarPg | 3<=DAG] | [KdStarGStar<=Pg & KdStarGStar<=KdStarGStarPgStar]]]]

abstracting: (KdStarGStar<=KdStarGStarPgStar) states: 564,819,179,989 (11)
abstracting: (KdStarGStar<=Pg) states: 817,589,955,787 (11)
abstracting: (3<=DAG) states: 58,569,619,476 (10)
abstracting: (KdStarGStarP3<=KdStarPg) states: 736,836,626,446 (11)
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 3m 0.376sec

checking: EF [[[~ [1<=DAG] & ~ [KdStarGStarP3k<=Pg]] & [[Gab1<=KdStarGStarPgStar & 3<=DAGE] & KdStarGStarPgStarP3<=GStarP3kP3]]]
normalized: E [true U [[KdStarGStarPgStarP3<=GStarP3kP3 & [Gab1<=KdStarGStarPgStar & 3<=DAGE]] & [~ [KdStarGStarP3k<=Pg] & ~ [1<=DAG]]]]

abstracting: (1<=DAG) states: 368,924,277,954 (11)
abstracting: (KdStarGStarP3k<=Pg) states: 817,589,955,787 (11)
abstracting: (3<=DAGE) states: 58,569,619,476 (10)
abstracting: (Gab1<=KdStarGStarPgStar) states: 356,466,615,377 (11)
abstracting: (KdStarGStarPgStarP3<=GStarP3kP3) states: 700,896,256,637 (11)
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m58.230sec

checking: EF [[[~ [AktP3<=KdStarGStarP3] | [1<=Pten | 1<=KdStarGStarPgStar]] & [~ [1<=KdStar] & [2<=P3k | KdStarGStarP3<=DAG]]]]
normalized: E [true U [[~ [1<=KdStar] & [2<=P3k | KdStarGStarP3<=DAG]] & [[1<=Pten | 1<=KdStarGStarPgStar] | ~ [AktP3<=KdStarGStarP3]]]]

abstracting: (AktP3<=KdStarGStarP3) states: 534,070,276,523 (11)
abstracting: (1<=KdStarGStarPgStar) states: 362,685,744,032 (11)
abstracting: (1<=Pten) states: 822,640,625,097 (11)
abstracting: (KdStarGStarP3<=DAG) states: 718,094,056,771 (11)
abstracting: (2<=P3k) states: 821,813,315,242 (11)
abstracting: (1<=KdStar) states: 469,977,654,509 (11)
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m24.418sec

checking: EF [[[[Enz<=KdStarGStarP3kP3 | KdStarGStarP3kP3<=KdStarGStarPgStar] | ~ [KdStarGStarPgStar<=KdStarGStarP3k]] & Pg<=KdStarGStarP3]]
normalized: E [true U [Pg<=KdStarGStarP3 & [~ [KdStarGStarPgStar<=KdStarGStarP3k] | [Enz<=KdStarGStarP3kP3 | KdStarGStarP3kP3<=KdStarGStarPgStar]]]]

abstracting: (KdStarGStarP3kP3<=KdStarGStarPgStar) states: 716,585,488,131 (11)
abstracting: (Enz<=KdStarGStarP3kP3) states: 1,013,298 (6)
abstracting: (KdStarGStarPgStar<=KdStarGStarP3k) states: 567,524,406,986 (11)
abstracting: (Pg<=KdStarGStarP3) states: 17,513,224,440 (10)
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m29.254sec

checking: AG [[[[1<=KdStarGStarP3kStarP2 | KdStarGStarPgStar<=KdStarPg] | 3<=KdStar] | [[GStarP3kP3<=DAGE & KdStarGP3<=DAG] & ~ [PtP2<=KdStarPgStar]]]]
normalized: ~ [E [true U ~ [[[[GStarP3kP3<=DAGE & KdStarGP3<=DAG] & ~ [PtP2<=KdStarPgStar]] | [3<=KdStar | [1<=KdStarGStarP3kStarP2 | KdStarGStarPgStar<=KdStarPg]]]]]]

abstracting: (KdStarGStarPgStar<=KdStarPg) states: 607,352,342,306 (11)
abstracting: (1<=KdStarGStarP3kStarP2) states: 167,755,076,831 (11)
abstracting: (3<=KdStar) states: 110,144,637,122 (11)
abstracting: (PtP2<=KdStarPgStar) states: 609,123,970,566 (11)
abstracting: (KdStarGP3<=DAG) states: 718,147,499,456 (11)
abstracting: (GStarP3kP3<=DAGE) states: 642,683,648,655 (11)
-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 5m43.982sec


Total processing time: 35m23.753sec


BK_STOP 1464786976996

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

3968 3382 5295 11703 17108 31307 124827 133681 131288 129623 128662
iterations count:11953 (186), effective:901 (14)

initing FirstDep: 0m 0.000sec

180762 175008 135500
iterations count:3361 (52), effective:248 (3)
61870 96818 93903 93406 126127 127033 132939 131715 139106 141563
iterations count:10711 (167), effective:865 (13)
166571
iterations count:1863 (29), effective:131 (2)
132190 106995 169231 158551
iterations count:4955 (77), effective:425 (6)
137653 131345 141917
iterations count:3399 (53), effective:261 (4)
202588 165552
iterations count:2985 (46), effective:250 (3)

iterations count:961 (15), effective:70 (1)
16127 50860 69614 74713 74934 124465 114951 130556 129749 133009
iterations count:10666 (166), effective:881 (13)
122022 131836 170192 154511 166869 159458 157566
iterations count:7425 (116), effective:623 (9)
146618
iterations count:1261 (19), effective:81 (1)
41936 53463 81964 128299 114528 106873 104355 127750 158423 177246 165832 157301 150459
iterations count:13353 (208), effective:1101 (17)
106327 112948 152679 133565 130239 132752 133343 163099 157366
iterations count:9921 (155), effective:840 (13)
77048 65175 96438 106831 97948 99861 101667 123144 117186 130139 152537 132427
iterations count:12822 (200), effective:1094 (17)

iterations count:225 (3), effective:42 (0)
107873 149899 140763
iterations count:3971 (62), effective:354 (5)
215186 195034 171235 140168
iterations count:4073 (63), effective:394 (6)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-10"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-10.tgz
mv S_Angiogenesis-PT-10 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-10, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r173kn-ebro-146433144700034"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;