Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_Angiogenesis-PT-10, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r173kn-ebro-146433144700031
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-0
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-1
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-15
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-2
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-3
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-4
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-5
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-6
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-7
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-8
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1464784849175


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_10
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.098sec


RS generation: 0m16.518sec


-> reachability set: #nodes 128274 (1.3e+05) #states 822,645,885,495 (11)



starting MCC model checker
--------------------------

checking: AG [~ [~ [EF [IS_FIREABLE [k61]]]]]
normalized: ~ [E [true U ~ [E [true U IS_FIREABLE [k61]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-10-CTLFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m53.041sec

checking: EF [~ [~ [AG [IS_FIREABLE [k56]]]]]
normalized: E [true U ~ [E [true U ~ [IS_FIREABLE [k56]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-10-CTLFireability-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m18.834sec

checking: EF [EX [IS_FIREABLE [k14]]]
normalized: E [true U EX [IS_FIREABLE [k14]]]

.-> the formula is TRUE

FORMULA Angiogenesis-PT-10-CTLFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m36.248sec

checking: AG [~ [AX [[IS_FIREABLE [k31] & IS_FIREABLE [k21]]]]]
normalized: ~ [E [true U ~ [EX [~ [[IS_FIREABLE [k31] & IS_FIREABLE [k21]]]]]]]

.-> the formula is FALSE

FORMULA Angiogenesis-PT-10-CTLFireability-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m48.198sec

checking: EF [[EF [~ [IS_FIREABLE [k48]]] & IS_FIREABLE [k12]]]
normalized: E [true U [IS_FIREABLE [k12] & E [true U ~ [IS_FIREABLE [k48]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-CTLFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m39.220sec

checking: AG [EG [~ [[IS_FIREABLE [k9] & IS_FIREABLE [k57]]]]]
normalized: ~ [E [true U ~ [EG [~ [[IS_FIREABLE [k9] & IS_FIREABLE [k57]]]]]]]

.
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-10-CTLFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m 6.956sec

checking: A [IS_FIREABLE [k21] U EF [[IS_FIREABLE [k55] & IS_FIREABLE [k12]]]]
normalized: [~ [EG [~ [E [true U [IS_FIREABLE [k55] & IS_FIREABLE [k12]]]]]] & ~ [E [~ [E [true U [IS_FIREABLE [k55] & IS_FIREABLE [k12]]]] U [~ [IS_FIREABLE [k21]] & ~ [E [true U [IS_FIREABLE [k55] & IS_FIREABLE [k12]]]]]]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-CTLFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m37.095sec

checking: EF [[EX [[IS_FIREABLE [k3] & IS_FIREABLE [k40]]] & IS_FIREABLE [k57]]]
normalized: E [true U [IS_FIREABLE [k57] & EX [[IS_FIREABLE [k3] & IS_FIREABLE [k40]]]]]

.-> the formula is TRUE

FORMULA Angiogenesis-PT-10-CTLFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m31.894sec

checking: A [~ [EX [IS_FIREABLE [k47]]] U [EG [IS_FIREABLE [k45]] | AG [IS_FIREABLE [k31]]]]
normalized: [~ [EG [~ [[~ [E [true U ~ [IS_FIREABLE [k31]]]] | EG [IS_FIREABLE [k45]]]]]] & ~ [E [~ [[~ [E [true U ~ [IS_FIREABLE [k31]]]] | EG [IS_FIREABLE [k45]]]] U [EX [IS_FIREABLE [k47]] & ~ [[~ [E [true U ~ [IS_FIREABLE [k31]]]] | EG [IS_FIREABLE [k45]]]]]]]]

..
EG iterations: 2
...
EG iterations: 2
..
EG iterations: 2
.
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-10-CTLFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m55.496sec

checking: [AG [EF [IS_FIREABLE [k51]]] & EF [EX [[IS_FIREABLE [k26] & IS_FIREABLE [k12]]]]]
normalized: [E [true U EX [[IS_FIREABLE [k26] & IS_FIREABLE [k12]]]] & ~ [E [true U ~ [E [true U IS_FIREABLE [k51]]]]]]

.-> the formula is FALSE

FORMULA Angiogenesis-PT-10-CTLFireability-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m58.067sec

checking: ~ [AG [~ [[[IS_FIREABLE [k52] | IS_FIREABLE [k9]] | [IS_FIREABLE [k56] & IS_FIREABLE [k7]]]]]]
normalized: E [true U [[IS_FIREABLE [k56] & IS_FIREABLE [k7]] | [IS_FIREABLE [k52] | IS_FIREABLE [k9]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-CTLFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m16.862sec

checking: E [[[~ [IS_FIREABLE [k37]] | ~ [IS_FIREABLE [k19]]] & [~ [IS_FIREABLE [k14]] | ~ [IS_FIREABLE [k21]]]] U AX [IS_FIREABLE [k19]]]
normalized: E [[[~ [IS_FIREABLE [k21]] | ~ [IS_FIREABLE [k14]]] & [~ [IS_FIREABLE [k19]] | ~ [IS_FIREABLE [k37]]]] U ~ [EX [~ [IS_FIREABLE [k19]]]]]

.-> the formula is TRUE

FORMULA Angiogenesis-PT-10-CTLFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 12m20.416sec

checking: [AG [IS_FIREABLE [k19]] | [[IS_FIREABLE [k51] & ~ [AF [IS_FIREABLE [k39]]]] | ~ [[EF [IS_FIREABLE [k60]] & [IS_FIREABLE [k26] | ~ [IS_FIREABLE [t1]]]]]]]
normalized: [[~ [[[IS_FIREABLE [k26] | ~ [IS_FIREABLE [t1]]] & E [true U IS_FIREABLE [k60]]]] | [IS_FIREABLE [k51] & EG [~ [IS_FIREABLE [k39]]]]] | ~ [E [true U ~ [IS_FIREABLE [k19]]]]]

.
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-10-CTLFireability-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m14.528sec

checking: EF [[[[[IS_FIREABLE [k38] & IS_FIREABLE [k29]] & IS_FIREABLE [k25]] & IS_FIREABLE [k46]] & ~ [[~ [IS_FIREABLE [k8]] & [IS_FIREABLE [k6] | IS_FIREABLE [k23]]]]]]
normalized: E [true U [~ [[[IS_FIREABLE [k6] | IS_FIREABLE [k23]] & ~ [IS_FIREABLE [k8]]]] & [IS_FIREABLE [k46] & [IS_FIREABLE [k25] & [IS_FIREABLE [k38] & IS_FIREABLE [k29]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-CTLFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m53.624sec

checking: [EX [[EF [IS_FIREABLE [k13]] | EG [IS_FIREABLE [k60]]]] & [[EF [~ [IS_FIREABLE [k49]]] | ~ [[[IS_FIREABLE [k51] & IS_FIREABLE [k37]] | ~ [IS_FIREABLE [k46]]]]] | AX [EF [IS_FIREABLE [k27]]]]]
normalized: [[~ [EX [~ [E [true U IS_FIREABLE [k27]]]]] | [~ [[~ [IS_FIREABLE [k46]] | [IS_FIREABLE [k51] & IS_FIREABLE [k37]]]] | E [true U ~ [IS_FIREABLE [k49]]]]] & EX [[EG [IS_FIREABLE [k60]] | E [true U IS_FIREABLE [k13]]]]]

..
EG iterations: 2
..-> the formula is TRUE

FORMULA Angiogenesis-PT-10-CTLFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 3m45.274sec

checking: [EF [[[~ [IS_FIREABLE [k23]] & [IS_FIREABLE [k6] | IS_FIREABLE [k11]]] & IS_FIREABLE [k10]]] & [[EF [[IS_FIREABLE [k63] | IS_FIREABLE [k43]]] | [IS_FIREABLE [k35] & [[IS_FIREABLE [k5] | IS_FIREABLE [k29]] | [IS_FIREABLE [k24] | IS_FIREABLE [k62]]]]] | IS_FIREABLE [k33]]]
normalized: [[IS_FIREABLE [k33] | [[IS_FIREABLE [k35] & [[IS_FIREABLE [k24] | IS_FIREABLE [k62]] | [IS_FIREABLE [k5] | IS_FIREABLE [k29]]]] | E [true U [IS_FIREABLE [k63] | IS_FIREABLE [k43]]]]] & E [true U [IS_FIREABLE [k10] & [[IS_FIREABLE [k6] | IS_FIREABLE [k11]] & ~ [IS_FIREABLE [k23]]]]]]


before gc: list nodes free: 2381733

after gc: idd nodes used:254568, unused:63745432; list nodes free:484717887
-> the formula is TRUE

FORMULA Angiogenesis-PT-10-CTLFireability-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m44.045sec


Total processing time: 36m17.716sec


BK_STOP 1464787027510

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

3968 3382 5295 11703 17108 31307 124827 133681 131288 129623 128662
iterations count:11953 (186), effective:901 (14)

initing FirstDep: 0m 0.000sec

151716
iterations count:1434 (22), effective:104 (1)
21049 59366 57519 85069 99025 93129 105100 122870 134515 128274
iterations count:10002 (156), effective:825 (12)
136403 137586
iterations count:2641 (41), effective:215 (3)
149389
iterations count:1032 (16), effective:69 (1)
60654 63734 122678 165631 219805 242232 249568 215914 153492
iterations count:9242 (144), effective:736 (11)

iterations count:144 (2), effective:5 (0)
130680
iterations count:1045 (16), effective:67 (1)
171531 130255
iterations count:2009 (31), effective:143 (2)
145274
iterations count:1923 (30), effective:137 (2)
145274
iterations count:1923 (30), effective:137 (2)

iterations count:64 (1), effective:0 (0)
145274
iterations count:1923 (30), effective:137 (2)
169791 154966
iterations count:2634 (41), effective:202 (3)

iterations count:151 (2), effective:29 (0)

iterations count:151 (2), effective:29 (0)

iterations count:329 (5), effective:22 (0)

iterations count:151 (2), effective:29 (0)
149134
iterations count:1062 (16), effective:71 (1)
21049 59366 57519 85069 99025 93129 105100 122870 134515 128274
iterations count:10002 (156), effective:825 (12)
193895 160416 142349
iterations count:3399 (53), effective:254 (3)
149374
iterations count:1052 (16), effective:71 (1)
116654 183640 168879 192460 211990 221948 211575 268124 288146 386474 373171 272403 277169 307239 296800 263643
iterations count:16271 (254), effective:1674 (26)

iterations count:134 (2), effective:10 (0)
169379
iterations count:1680 (26), effective:117 (1)
86174 182241 199651 201950 160998
iterations count:5659 (88), effective:432 (6)
130680
iterations count:1044 (16), effective:67 (1)

iterations count:183 (2), effective:33 (0)
169686
iterations count:1847 (28), effective:128 (2)
164083 168502 147076
iterations count:3226 (50), effective:231 (3)
149375
iterations count:1023 (15), effective:69 (1)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-10"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-10.tgz
mv S_Angiogenesis-PT-10 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-10, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r173kn-ebro-146433144700031"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;