Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_Angiogenesis-PT-05, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r173kn-ebro-146433144700025
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1464784845308


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityCardinality.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_05
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.038sec


RS generation: 0m 0.903sec


-> reachability set: #nodes 10921 (1.1e+04) #states 42,734,935 (7)



starting MCC model checker
--------------------------

checking: AG [~ [~ [KdStarGStarP3kStarP3P2<=Pg]]]
normalized: ~ [E [true U ~ [KdStarGStarP3kStarP3P2<=Pg]]]

abstracting: (KdStarGStarP3kStarP3P2<=Pg) states: 42,718,733 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.654sec

checking: EF [~ [~ [[KdStarPgStarP2<=KdStarGStarP3kP3 & 3<=DAGE]]]]
normalized: E [true U [KdStarPgStarP2<=KdStarGStarP3kP3 & 3<=DAGE]]

abstracting: (3<=DAGE) states: 719,420 (5)
abstracting: (KdStarPgStarP2<=KdStarGStarP3kP3) states: 37,674,103 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.706sec

checking: EF [[~ [[GStarP3<=AktP3 | 1<=Pg]] & 2<=KdStarGStarPgStarP3]]
normalized: E [true U [2<=KdStarGStarPgStarP3 & ~ [[GStarP3<=AktP3 | 1<=Pg]]]]

abstracting: (1<=Pg) states: 39,776,484 (7)
abstracting: (GStarP3<=AktP3) states: 35,909,296 (7)
abstracting: (2<=KdStarGStarPgStarP3) states: 307,322 (5)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.307sec

checking: AG [~ [[~ [GStarP3<=Pg] & [1<=AktP3 & 1<=KdStarGStarP3kStarP2]]]]
normalized: ~ [E [true U [[1<=AktP3 & 1<=KdStarGStarP3kStarP2] & ~ [GStarP3<=Pg]]]]

abstracting: (GStarP3<=Pg) states: 41,824,877 (7)
abstracting: (1<=KdStarGStarP3kStarP2) states: 4,240,836 (6)
abstracting: (1<=AktP3) states: 11,130,991 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.504sec

checking: AG [[KdStar<=Akt | ~ [KdStarGStarP3kP3<=PtP3]]]
normalized: ~ [E [true U ~ [[KdStar<=Akt | ~ [KdStarGStarP3kP3<=PtP3]]]]]

abstracting: (KdStarGStarP3kP3<=PtP3) states: 39,610,297 (7)
abstracting: (KdStar<=Akt) states: 38,275,067 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 3.697sec

checking: AG [~ [[1<=KdStarGStarPgP3 & [KdStarGStarP3kStarP2<=KdStarGStarPgStar | 3<=GStarP3kP3]]]]
normalized: ~ [E [true U [1<=KdStarGStarPgP3 & [KdStarGStarP3kStarP2<=KdStarGStarPgStar | 3<=GStarP3kP3]]]]

abstracting: (3<=GStarP3kP3) states: 115,195 (5)
abstracting: (KdStarGStarP3kStarP2<=KdStarGStarPgStar) states: 39,491,837 (7)
abstracting: (1<=KdStarGStarPgP3) states: 4,166,196 (6)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.575sec

checking: AG [~ [[~ [2<=AktP3] & [2<=KdStarGStarP3kStarP3 & Pip3<=GP3]]]]
normalized: ~ [E [true U [~ [2<=AktP3] & [2<=KdStarGStarP3kStarP3 & Pip3<=GP3]]]]

abstracting: (Pip3<=GP3) states: 31,101,658 (7)
abstracting: (2<=KdStarGStarP3kStarP3) states: 314,760 (5)
abstracting: (2<=AktP3) states: 2,310,356 (6)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.189sec

checking: AG [~ [[~ [KdStarGP3<=KdStarGStarPgStar] & [1<=PtP3 | 2<=DAGE]]]]
normalized: ~ [E [true U [~ [KdStarGP3<=KdStarGStarPgStar] & [1<=PtP3 | 2<=DAGE]]]]

abstracting: (2<=DAGE) states: 3,537,642 (6)
abstracting: (1<=PtP3) states: 13,507,981 (7)
abstracting: (KdStarGP3<=KdStarGStarPgStar) states: 39,596,634 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.674sec

checking: EF [[[[1<=KdStarGP3 & 1<=KdStarGStarP3kStarP2] | 3<=GStarP3] & ~ [[1<=KdStarGStarPgP3 & 2<=KdStarGStarP3kStarP2]]]]
normalized: E [true U [~ [[1<=KdStarGStarPgP3 & 2<=KdStarGStarP3kStarP2]] & [3<=GStarP3 | [1<=KdStarGP3 & 1<=KdStarGStarP3kStarP2]]]]

abstracting: (1<=KdStarGStarP3kStarP2) states: 4,240,836 (6)
abstracting: (1<=KdStarGP3) states: 4,136,039 (6)
abstracting: (3<=GStarP3) states: 115,195 (5)
abstracting: (2<=KdStarGStarP3kStarP2) states: 314,760 (5)
abstracting: (1<=KdStarGStarPgP3) states: 4,166,196 (6)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.861sec

checking: AG [[KdStarGStarP3<=KdStarGStarP3kStarP3 | ~ [[2<=KdStarGP3 & Pg<=KdStarPgStarP2]]]]
normalized: ~ [E [true U ~ [[KdStarGStarP3<=KdStarGStarP3kStarP3 | ~ [[2<=KdStarGP3 & Pg<=KdStarPgStarP2]]]]]]

abstracting: (Pg<=KdStarPgStarP2) states: 4,399,847 (6)
abstracting: (2<=KdStarGP3) states: 295,939 (5)
abstracting: (KdStarGStarP3<=KdStarGStarP3kStarP3) states: 38,793,091 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.130sec

checking: EF [~ [[KdStarGStarP3kStarP2<=Pten | [KdStarGStarP3kStar<=KdStarGStarP3kStarP2 | KdStarGStarP3kStarP3P2<=AktP3]]]]
normalized: E [true U ~ [[KdStarGStarP3kStarP2<=Pten | [KdStarGStarP3kStar<=KdStarGStarP3kStarP2 | KdStarGStarP3kStarP3P2<=AktP3]]]]

abstracting: (KdStarGStarP3kStarP3P2<=AktP3) states: 41,767,108 (7)
abstracting: (KdStarGStarP3kStar<=KdStarGStarP3kStarP2) states: 30,915,027 (7)
abstracting: (KdStarGStarP3kStarP2<=Pten) states: 42,734,935 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.056sec

checking: EF [[[~ [KdStarGStarPgStarP3<=KdStarGStar] & ~ [PtP3<=Pip2]] & KdStarGStarPgStarP3P2<=Pip2]]
normalized: E [true U [KdStarGStarPgStarP3P2<=Pip2 & [~ [KdStarGStarPgStarP3<=KdStarGStar] & ~ [PtP3<=Pip2]]]]

abstracting: (PtP3<=Pip2) states: 32,137,941 (7)
abstracting: (KdStarGStarPgStarP3<=KdStarGStar) states: 39,566,612 (7)
abstracting: (KdStarGStarPgStarP3P2<=Pip2) states: 41,824,252 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.942sec

checking: AG [[~ [[KdStarGStarP3kStarP2<=KdStarGP3 & 1<=Enz]] | ~ [[Akt<=Pten & 3<=Pip3]]]]
normalized: ~ [E [true U ~ [[~ [[Akt<=Pten & 3<=Pip3]] | ~ [[KdStarGStarP3kStarP2<=KdStarGP3 & 1<=Enz]]]]]]

abstracting: (1<=Enz) states: 42,727,493 (7)
abstracting: (KdStarGStarP3kStarP2<=KdStarGP3) states: 38,793,091 (7)
abstracting: (3<=Pip3) states: 718,700 (5)
abstracting: (Akt<=Pten) states: 37,084,227 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.109sec

checking: EF [[[3<=KdStarGStarPgP3 & [2<=DAGE & P3k<=KdStarPgStar]] & ~ [[PtP2<=GStarPgP3 & 3<=GStarP3kP3]]]]
normalized: E [true U [~ [[PtP2<=GStarPgP3 & 3<=GStarP3kP3]] & [3<=KdStarGStarPgP3 & [2<=DAGE & P3k<=KdStarPgStar]]]]

abstracting: (P3k<=KdStarPgStar) states: 1,208,571 (6)
abstracting: (2<=DAGE) states: 3,537,642 (6)
abstracting: (3<=KdStarGStarPgP3) states: 15,826 (4)
abstracting: (3<=GStarP3kP3) states: 115,195 (5)
abstracting: (PtP2<=GStarPgP3) states: 31,003,985 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.113sec

checking: EF [[[~ [KdStarGP3<=Pip2] & [2<=KdStarGStarP3k | Akt<=DAG]] & [~ [KdStarPgStarP2<=PtP2] | ~ [2<=KdStarGStarPg]]]]
normalized: E [true U [[~ [2<=KdStarGStarPg] | ~ [KdStarPgStarP2<=PtP2]] & [[2<=KdStarGStarP3k | Akt<=DAG] & ~ [KdStarGP3<=Pip2]]]]

abstracting: (KdStarGP3<=Pip2) states: 39,684,472 (7)
abstracting: (Akt<=DAG) states: 10,774,506 (7)
abstracting: (2<=KdStarGStarP3k) states: 2,965,900 (6)
abstracting: (KdStarPgStarP2<=PtP2) states: 38,613,642 (7)
abstracting: (2<=KdStarGStarPg) states: 2,863,251 (6)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 4.899sec

checking: EF [[~ [[3<=P3k & KdStarGStarPgP3<=DAGE]] & [[2<=Pg & KdStar<=KdStarGStarPgP3] | [2<=KdStarPgStar | 3<=KdStarGStar]]]]
normalized: E [true U [[[2<=KdStarPgStar | 3<=KdStarGStar] | [2<=Pg & KdStar<=KdStarGStarPgP3]] & ~ [[3<=P3k & KdStarGStarPgP3<=DAGE]]]]

abstracting: (KdStarGStarPgP3<=DAGE) states: 39,669,931 (7)
abstracting: (3<=P3k) states: 36,573,622 (7)
abstracting: (KdStar<=KdStarGStarPgP3) states: 26,080,643 (7)
abstracting: (2<=Pg) states: 32,306,252 (7)
abstracting: (3<=KdStarGStar) states: 512,541 (5)
abstracting: (2<=KdStarPgStar) states: 5,349,501 (6)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityCardinality-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 3.613sec


Total processing time: 0m39.759sec


BK_STOP 1464784885134

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

1096 1888 3952 10799 10915
iterations count:5829 (91), effective:437 (6)

initing FirstDep: 0m 0.000sec

8056 10889 12657 11964
iterations count:4609 (72), effective:367 (5)
8793 11706 14163 12329
iterations count:4085 (63), effective:306 (4)
2505 5662 12519 12570
iterations count:4572 (71), effective:367 (5)
6914 9032 9454 10482 11140
iterations count:5326 (83), effective:422 (6)
11851 13422
iterations count:2404 (37), effective:184 (2)
11067
iterations count:1571 (24), effective:116 (1)
7896 12363 13924
iterations count:3623 (56), effective:269 (4)
12277 12621 13288 13748
iterations count:4485 (70), effective:353 (5)
10246 13027 14659 13096
iterations count:4588 (71), effective:350 (5)
6485 13860
iterations count:2728 (42), effective:209 (3)
16530 14011 14560
iterations count:3772 (58), effective:291 (4)
14893 13568 10874
iterations count:3807 (59), effective:305 (4)
9300 9454 11160 11483
iterations count:4868 (76), effective:422 (6)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-05"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-05.tgz
mv S_Angiogenesis-PT-05 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-05, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r173kn-ebro-146433144700025"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;