Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.....................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_Angiogenesis-PT-05, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r173kn-ebro-146433144700022
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-0
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-1
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-15
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-2
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-3
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-4
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-5
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-6
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-7
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-8
FORMULA_NAME Angiogenesis-PT-05-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1464784841505


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_05
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 5.993sec


RS generation: 0m 0.836sec


-> reachability set: #nodes 10921 (1.1e+04) #states 42,734,935 (7)



starting MCC model checker
--------------------------

checking: ~ [AF [AG [~ [IS_FIREABLE [k14]]]]]
normalized: EG [E [true U IS_FIREABLE [k14]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.577sec

checking: EF [AG [~ [IS_FIREABLE [k43]]]]
normalized: E [true U ~ [E [true U IS_FIREABLE [k43]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.294sec

checking: AF [AF [EF [IS_FIREABLE [k27]]]]
normalized: ~ [EG [EG [~ [E [true U IS_FIREABLE [k27]]]]]]

.
EG iterations: 1
.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.882sec

checking: AF [EF [EG [IS_FIREABLE [k46]]]]
normalized: ~ [EG [~ [E [true U EG [IS_FIREABLE [k46]]]]]]

..
EG iterations: 2
.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.691sec

checking: AX [EF [EF [IS_FIREABLE [k52]]]]
normalized: ~ [EX [~ [E [true U E [true U IS_FIREABLE [k52]]]]]]

.-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.073sec

checking: EG [AG [[~ [IS_FIREABLE [k51]] | IS_FIREABLE [k8]]]]
normalized: EG [~ [E [true U ~ [[IS_FIREABLE [k8] | ~ [IS_FIREABLE [k51]]]]]]]

.
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLFireability-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.301sec

checking: ~ [EF [E [IS_FIREABLE [k37] U IS_FIREABLE [k25]]]]
normalized: ~ [E [true U E [IS_FIREABLE [k37] U IS_FIREABLE [k25]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLFireability-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.355sec

checking: ~ [AG [EF [[IS_FIREABLE [k56] | IS_FIREABLE [k43]]]]]
normalized: E [true U ~ [E [true U [IS_FIREABLE [k56] | IS_FIREABLE [k43]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.238sec

checking: E [~ [EG [IS_FIREABLE [k39]]] U [EF [IS_FIREABLE [k47]] | IS_FIREABLE [k40]]]
normalized: E [~ [EG [IS_FIREABLE [k39]]] U [IS_FIREABLE [k40] | E [true U IS_FIREABLE [k47]]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.323sec

checking: EF [E [~ [IS_FIREABLE [k50]] U [IS_FIREABLE [k58] & IS_FIREABLE [k23]]]]
normalized: E [true U E [~ [IS_FIREABLE [k50]] U [IS_FIREABLE [k58] & IS_FIREABLE [k23]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.766sec

checking: [EG [E [IS_FIREABLE [k10] U IS_FIREABLE [k21]]] | AG [AF [~ [IS_FIREABLE [k50]]]]]
normalized: [~ [E [true U EG [IS_FIREABLE [k50]]]] | EG [E [IS_FIREABLE [k10] U IS_FIREABLE [k21]]]]

..
EG iterations: 2
..
EG iterations: 2
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLFireability-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.367sec

checking: AF [[~ [EF [IS_FIREABLE [k22]]] | EF [[IS_FIREABLE [k48] & IS_FIREABLE [k63]]]]]
normalized: ~ [EG [~ [[E [true U [IS_FIREABLE [k48] & IS_FIREABLE [k63]]] | ~ [E [true U IS_FIREABLE [k22]]]]]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.446sec

checking: [EF [[IS_FIREABLE [k20] & AF [IS_FIREABLE [k6]]]] | IS_FIREABLE [k27]]
normalized: [IS_FIREABLE [k27] | E [true U [IS_FIREABLE [k20] & ~ [EG [~ [IS_FIREABLE [k6]]]]]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.344sec

checking: ~ [AG [[~ [[IS_FIREABLE [k51] | IS_FIREABLE [k29]]] | [IS_FIREABLE [k54] | ~ [IS_FIREABLE [k6]]]]]]
normalized: E [true U ~ [[[IS_FIREABLE [k54] | ~ [IS_FIREABLE [k6]]] | ~ [[IS_FIREABLE [k51] | IS_FIREABLE [k29]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.693sec

checking: AG [[~ [AX [IS_FIREABLE [k46]]] | [EG [IS_FIREABLE [t0]] & [[IS_FIREABLE [k24] | IS_FIREABLE [k10]] & IS_FIREABLE [k31]]]]]
normalized: ~ [E [true U ~ [[[[IS_FIREABLE [k31] & [IS_FIREABLE [k24] | IS_FIREABLE [k10]]] & EG [IS_FIREABLE [t0]]] | EX [~ [IS_FIREABLE [k46]]]]]]]

..
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.998sec

checking: [EF [AX [~ [IS_FIREABLE [k57]]]] & [[[[IS_FIREABLE [k56] & [IS_FIREABLE [k63] | IS_FIREABLE [k56]]] | [[IS_FIREABLE [k39] & IS_FIREABLE [k20]] | IS_FIREABLE [k63]]] | [[[IS_FIREABLE [k56] | IS_FIREABLE [k41]] & ~ [IS_FIREABLE [k57]]] & ~ [[IS_FIREABLE [k62] & IS_FIREABLE [k35]]]]] | ~ [[IS_FIREABLE [k10] | [IS_FIREABLE [k63] | IS_FIREABLE [k2]]]]]]
normalized: [[~ [[IS_FIREABLE [k10] | [IS_FIREABLE [k63] | IS_FIREABLE [k2]]]] | [[~ [[IS_FIREABLE [k62] & IS_FIREABLE [k35]]] & [~ [IS_FIREABLE [k57]] & [IS_FIREABLE [k56] | IS_FIREABLE [k41]]]] | [[IS_FIREABLE [k63] | [IS_FIREABLE [k39] & IS_FIREABLE [k20]]] | [IS_FIREABLE [k56] & [IS_FIREABLE [k63] | IS_FIREABLE [k56]]]]]] & E [true U ~ [EX [IS_FIREABLE [k57]]]]]

.-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.727sec


Total processing time: 0m30.241sec


BK_STOP 1464784871801

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

1096 1888 3952 10799 10915
iterations count:5829 (91), effective:437 (6)

initing FirstDep: 0m 0.000sec

12759
iterations count:1078 (16), effective:72 (1)
12759
iterations count:1074 (16), effective:72 (1)
4631 7801 8059 11246
iterations count:4785 (74), effective:390 (6)
14211
iterations count:1847 (28), effective:128 (2)
13734
iterations count:1774 (27), effective:126 (1)
12759
iterations count:1061 (16), effective:71 (1)

iterations count:64 (1), effective:0 (0)
12768
iterations count:1110 (17), effective:75 (1)
11404
iterations count:1580 (24), effective:107 (1)

iterations count:919 (14), effective:59 (0)

iterations count:486 (7), effective:35 (0)
4631 7801 8059 11246
iterations count:4785 (74), effective:390 (6)
14216
iterations count:1514 (23), effective:109 (1)

iterations count:64 (1), effective:0 (0)
15265 15997 13934
iterations count:3134 (48), effective:225 (3)

iterations count:84 (1), effective:5 (0)
9425
iterations count:1167 (18), effective:78 (1)
11681
iterations count:1167 (18), effective:78 (1)
12759
iterations count:1064 (16), effective:70 (1)
11841 14433
iterations count:2733 (42), effective:199 (3)
10251 13601 11324
iterations count:3018 (47), effective:219 (3)
12101 14095 12901
iterations count:3201 (50), effective:236 (3)
3718 6073 7164 14350 14320
iterations count:5991 (93), effective:502 (7)
10803 11963 10950
iterations count:3283 (51), effective:272 (4)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-05"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-05.tgz
mv S_Angiogenesis-PT-05 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-05, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r173kn-ebro-146433144700022"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;