Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...............
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_Angiogenesis-PT-01, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r173kn-ebro-146433144700018
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-0
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-1
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-15
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-2
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-3
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-4
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-5
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-6
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-7
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-8
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1464784837347


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_01
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.162sec


RS generation: 0m 0.019sec


-> reachability set: #nodes 244 (2.4e+02) #states 110



starting MCC model checker
--------------------------

checking: EF [IS_FIREABLE [k36]]
normalized: E [true U IS_FIREABLE [k36]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: EF [IS_FIREABLE [k29]]
normalized: E [true U IS_FIREABLE [k29]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.007sec

checking: AG [IS_FIREABLE [k19]]
normalized: ~ [E [true U ~ [IS_FIREABLE [k19]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: AG [IS_FIREABLE [k52]]
normalized: ~ [E [true U ~ [IS_FIREABLE [k52]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [~ [IS_FIREABLE [k32]]]
normalized: E [true U ~ [IS_FIREABLE [k32]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[~ [~ [IS_FIREABLE [k53]]] | IS_FIREABLE [k41]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [k53] | IS_FIREABLE [k41]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: EF [~ [~ [[~ [IS_FIREABLE [k33]] | IS_FIREABLE [k29]]]]]
normalized: E [true U [IS_FIREABLE [k29] | ~ [IS_FIREABLE [k33]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[~ [~ [[IS_FIREABLE [k32] & IS_FIREABLE [k30]]]] | IS_FIREABLE [k29]]]
normalized: E [true U [IS_FIREABLE [k29] | [IS_FIREABLE [k32] & IS_FIREABLE [k30]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[[IS_FIREABLE [k35] & ~ [IS_FIREABLE [k22]]] & IS_FIREABLE [k36]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [k36] & [IS_FIREABLE [k35] & ~ [IS_FIREABLE [k22]]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[~ [~ [IS_FIREABLE [k62]]] | [~ [[IS_FIREABLE [k40] | IS_FIREABLE [k56]]] & IS_FIREABLE [k55]]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [k62] | [IS_FIREABLE [k55] & ~ [[IS_FIREABLE [k40] | IS_FIREABLE [k56]]]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [~ [~ [[[IS_FIREABLE [k54] & IS_FIREABLE [k24]] | [IS_FIREABLE [k47] & IS_FIREABLE [k13]]]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [k47] & IS_FIREABLE [k13]] | [IS_FIREABLE [k54] & IS_FIREABLE [k24]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[~ [[[IS_FIREABLE [k29] & IS_FIREABLE [k3]] | [IS_FIREABLE [k27] | IS_FIREABLE [k2]]]] & ~ [IS_FIREABLE [k43]]]]
normalized: E [true U [~ [IS_FIREABLE [k43]] & ~ [[[IS_FIREABLE [k27] | IS_FIREABLE [k2]] | [IS_FIREABLE [k29] & IS_FIREABLE [k3]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[[IS_FIREABLE [t0] | [~ [IS_FIREABLE [k48]] | ~ [IS_FIREABLE [k35]]]] & [IS_FIREABLE [k51] | ~ [IS_FIREABLE [k59]]]]]
normalized: E [true U [[IS_FIREABLE [k51] | ~ [IS_FIREABLE [k59]]] & [IS_FIREABLE [t0] | [~ [IS_FIREABLE [k35]] | ~ [IS_FIREABLE [k48]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [~ [[[[IS_FIREABLE [k52] | IS_FIREABLE [k24]] | [IS_FIREABLE [k15] | IS_FIREABLE [k37]]] & [[IS_FIREABLE [k12] | IS_FIREABLE [k59]] & ~ [IS_FIREABLE [k55]]]]]]
normalized: ~ [E [true U [[~ [IS_FIREABLE [k55]] & [IS_FIREABLE [k12] | IS_FIREABLE [k59]]] & [[IS_FIREABLE [k15] | IS_FIREABLE [k37]] | [IS_FIREABLE [k52] | IS_FIREABLE [k24]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[[~ [[IS_FIREABLE [k30] & IS_FIREABLE [k42]]] & [~ [IS_FIREABLE [k63]] | [IS_FIREABLE [k62] | IS_FIREABLE [k45]]]] | [~ [~ [IS_FIREABLE [k49]]] & [[IS_FIREABLE [k61] | IS_FIREABLE [k49]] & [IS_FIREABLE [k51] & IS_FIREABLE [k20]]]]]]
normalized: ~ [E [true U ~ [[[IS_FIREABLE [k49] & [[IS_FIREABLE [k51] & IS_FIREABLE [k20]] & [IS_FIREABLE [k61] | IS_FIREABLE [k49]]]] | [[[IS_FIREABLE [k62] | IS_FIREABLE [k45]] | ~ [IS_FIREABLE [k63]]] & ~ [[IS_FIREABLE [k30] & IS_FIREABLE [k42]]]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[[[IS_FIREABLE [k14] & IS_FIREABLE [k36]] | [[IS_FIREABLE [k15] | IS_FIREABLE [k50]] | ~ [IS_FIREABLE [k27]]]] | [[IS_FIREABLE [k16] & [IS_FIREABLE [k59] & IS_FIREABLE [k31]]] & [[IS_FIREABLE [k9] | IS_FIREABLE [k7]] & ~ [IS_FIREABLE [k27]]]]]]
normalized: E [true U [[[~ [IS_FIREABLE [k27]] & [IS_FIREABLE [k9] | IS_FIREABLE [k7]]] & [IS_FIREABLE [k16] & [IS_FIREABLE [k59] & IS_FIREABLE [k31]]]] | [[~ [IS_FIREABLE [k27]] | [IS_FIREABLE [k15] | IS_FIREABLE [k50]]] | [IS_FIREABLE [k14] & IS_FIREABLE [k36]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityFireability-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec


Total processing time: 0m 8.883sec


BK_STOP 1464784846278

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:882 (13), effective:52 (0)

initing FirstDep: 0m 0.000sec


iterations count:178 (2), effective:7 (0)

iterations count:461 (7), effective:28 (0)

iterations count:71 (1), effective:1 (0)

iterations count:74 (1), effective:1 (0)

iterations count:70 (1), effective:1 (0)

iterations count:144 (2), effective:6 (0)

iterations count:70 (1), effective:1 (0)

iterations count:461 (7), effective:28 (0)

iterations count:83 (1), effective:1 (0)

iterations count:100 (1), effective:2 (0)

iterations count:64 (1), effective:0 (0)

iterations count:78 (1), effective:2 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-01"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-01.tgz
mv S_Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-01, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r173kn-ebro-146433144700018"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;