Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...............
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_Angiogenesis-PT-01, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r173kn-ebro-146433144700016
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1464784834198


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityCardinality.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_01
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.262sec


RS generation: 0m 0.024sec


-> reachability set: #nodes 244 (2.4e+02) #states 110



starting MCC model checker
--------------------------

checking: EF [2<=Pg]
normalized: E [true U 2<=Pg]

abstracting: (2<=Pg) states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [3<=Enz]
normalized: E [true U 3<=Enz]

abstracting: (3<=Enz) states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [KdStarGStarP3kStarP3P2<=KdStar]
normalized: E [true U KdStarGStarP3kStarP3P2<=KdStar]

abstracting: (KdStarGStarP3kStarP3P2<=KdStar) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.005sec

checking: AG [GP3<=KdStarGStarPgStarP3P2]
normalized: ~ [E [true U ~ [GP3<=KdStarGStarPgStarP3P2]]]

abstracting: (GP3<=KdStarGStarPgStarP3P2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [KdStarGStarP3k<=KdStarGStarPgP3]
normalized: ~ [E [true U ~ [KdStarGStarP3k<=KdStarGStarPgP3]]]

abstracting: (KdStarGStarP3k<=KdStarGStarPgP3) states: 97
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.008sec

checking: EF [Pip2<=Pip3]
normalized: E [true U Pip2<=Pip3]

abstracting: (Pip2<=Pip3) states: 96
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: EF [~ [AktStar<=PtP3P2]]
normalized: E [true U ~ [AktStar<=PtP3P2]]

abstracting: (AktStar<=PtP3P2) states: 66
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.011sec

checking: AG [[1<=DAGE & 3<=KdStarGStarP3kStarP2]]
normalized: ~ [E [true U ~ [[1<=DAGE & 3<=KdStarGStarP3kStarP2]]]]

abstracting: (3<=KdStarGStarP3kStarP2) states: 0
abstracting: (1<=DAGE) states: 14
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [~ [Enz<=PtP3]]
normalized: E [true U ~ [Enz<=PtP3]]

abstracting: (Enz<=PtP3) states: 24
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: EF [~ [~ [~ [GStarP3kP3<=KdStarGStarP3kP3]]]]
normalized: E [true U ~ [GStarP3kP3<=KdStarGStarP3kP3]]

abstracting: (GStarP3kP3<=KdStarGStarP3kP3) states: 104
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.006sec

checking: AG [[[~ [1<=KdStarGStarP3] & [1<=Enz & 1<=P3k]] & 1<=KdStarG]]
normalized: ~ [E [true U ~ [[1<=KdStarG & [[1<=Enz & 1<=P3k] & ~ [1<=KdStarGStarP3]]]]]]

abstracting: (1<=KdStarGStarP3) states: 2
abstracting: (1<=P3k) states: 72
abstracting: (1<=Enz) states: 96
abstracting: (1<=KdStarG) states: 4
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: EF [~ [[[3<=Akt & KdStarGStarPg<=PtP3] & 2<=KdStarGP3]]]
normalized: E [true U ~ [[2<=KdStarGP3 & [3<=Akt & KdStarGStarPg<=PtP3]]]]

abstracting: (KdStarGStarPg<=PtP3) states: 99
abstracting: (3<=Akt) states: 0
abstracting: (2<=KdStarGP3) states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: AG [~ [[~ [Pten<=KdStarGStarPgStar] & [2<=KdStarGStarPg & GStarPgP3<=DAGE]]]]
normalized: ~ [E [true U [[2<=KdStarGStarPg & GStarPgP3<=DAGE] & ~ [Pten<=KdStarGStarPgStar]]]]

abstracting: (Pten<=KdStarGStarPgStar) states: 33
abstracting: (GStarPgP3<=DAGE) states: 108
abstracting: (2<=KdStarGStarPg) states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EF [[~ [[3<=KdStarGStarP3kStar | Pip2<=Pten]] & DAG<=KdStarGStarP3k]]
normalized: E [true U [DAG<=KdStarGStarP3k & ~ [[3<=KdStarGStarP3kStar | Pip2<=Pten]]]]

abstracting: (Pip2<=Pten) states: 110
abstracting: (3<=KdStarGStarP3kStar) states: 0
abstracting: (DAG<=KdStarGStarP3k) states: 98
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [[3<=KdStarGStarPgP3 | [[2<=KdStarPg & 1<=KdStarGStarP3kStarP3P2] | [1<=KdStarGStarPgP3 & KdStarGStarPg<=AktStar]]]]
normalized: ~ [E [true U ~ [[3<=KdStarGStarPgP3 | [[2<=KdStarPg & 1<=KdStarGStarP3kStarP3P2] | [1<=KdStarGStarPgP3 & KdStarGStarPg<=AktStar]]]]]]

abstracting: (KdStarGStarPg<=AktStar) states: 103
abstracting: (1<=KdStarGStarPgP3) states: 2
abstracting: (1<=KdStarGStarP3kStarP3P2) states: 0
abstracting: (2<=KdStarPg) states: 0
abstracting: (3<=KdStarGStarPgP3) states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: EF [~ [[[GP3<=Enz | KdStarGP3<=Enz] | [1<=KdStarGP3 & DAGE<=AktStar]]]]
normalized: E [true U ~ [[[1<=KdStarGP3 & DAGE<=AktStar] | [GP3<=Enz | KdStarGP3<=Enz]]]]

abstracting: (KdStarGP3<=Enz) states: 110
abstracting: (GP3<=Enz) states: 110
abstracting: (DAGE<=AktStar) states: 101
abstracting: (1<=KdStarGP3) states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec


Total processing time: 0m 9.686sec


BK_STOP 1464784843924

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:882 (13), effective:52 (0)

initing FirstDep: 0m 0.000sec


iterations count:64 (1), effective:0 (0)

iterations count:452 (7), effective:29 (0)

iterations count:151 (2), effective:8 (0)

iterations count:468 (7), effective:29 (0)

iterations count:64 (1), effective:0 (0)

iterations count:100 (1), effective:2 (0)

iterations count:534 (8), effective:35 (0)

iterations count:66 (1), effective:1 (0)

iterations count:64 (1), effective:0 (0)

iterations count:74 (1), effective:1 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-01"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-01.tgz
mv S_Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-01, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r173kn-ebro-146433144700016"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;