Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_Angiogenesis-PT-01, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r173kn-ebro-146433144700013
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-0
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-1
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-15
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-2
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-3
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-4
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-5
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-6
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-7
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-8
FORMULA_NAME Angiogenesis-PT-01-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1464784833202


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_01
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.313sec


RS generation: 0m 0.019sec


-> reachability set: #nodes 244 (2.4e+02) #states 110



starting MCC model checker
--------------------------

checking: AX [IS_FIREABLE [t1]]
normalized: ~ [EX [~ [IS_FIREABLE [t1]]]]

.-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: ~ [IS_FIREABLE [k23]]
normalized: ~ [IS_FIREABLE [k23]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: ~ [AF [IS_FIREABLE [k32]]]
normalized: EG [~ [IS_FIREABLE [k32]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: AX [EX [IS_FIREABLE [k16]]]
normalized: ~ [EX [~ [EX [IS_FIREABLE [k16]]]]]

..-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: IS_FIREABLE [k5]
normalized: IS_FIREABLE [k5]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AG [IS_FIREABLE [k37]]
normalized: ~ [E [true U ~ [IS_FIREABLE [k37]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.005sec

checking: EG [EX [[~ [IS_FIREABLE [k60]] & IS_FIREABLE [k16]]]]
normalized: EG [EX [[IS_FIREABLE [k16] & ~ [IS_FIREABLE [k60]]]]]

..
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: AG [[AG [IS_FIREABLE [k47]] & A [IS_FIREABLE [k7] U IS_FIREABLE [k51]]]]
normalized: ~ [E [true U ~ [[[~ [EG [~ [IS_FIREABLE [k51]]]] & ~ [E [~ [IS_FIREABLE [k51]] U [~ [IS_FIREABLE [k7]] & ~ [IS_FIREABLE [k51]]]]]] & ~ [E [true U ~ [IS_FIREABLE [k47]]]]]]]]

.
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: ~ [AF [[IS_FIREABLE [k60] & [~ [IS_FIREABLE [k14]] & [IS_FIREABLE [k6] | IS_FIREABLE [k42]]]]]]
normalized: EG [~ [[IS_FIREABLE [k60] & [[IS_FIREABLE [k6] | IS_FIREABLE [k42]] & ~ [IS_FIREABLE [k14]]]]]]


EG iterations: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: [~ [[~ [[[IS_FIREABLE [k49] | IS_FIREABLE [k20]] & IS_FIREABLE [k34]]] | IS_FIREABLE [k36]]] | IS_FIREABLE [k60]]
normalized: [IS_FIREABLE [k60] | ~ [[IS_FIREABLE [k36] | ~ [[IS_FIREABLE [k34] & [IS_FIREABLE [k49] | IS_FIREABLE [k20]]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: [[IS_FIREABLE [k56] & ~ [AX [[IS_FIREABLE [k15] & IS_FIREABLE [k17]]]]] | AF [[[IS_FIREABLE [k60] & ~ [IS_FIREABLE [k48]]] | AF [IS_FIREABLE [k36]]]]]
normalized: [~ [EG [~ [[~ [EG [~ [IS_FIREABLE [k36]]]] | [IS_FIREABLE [k60] & ~ [IS_FIREABLE [k48]]]]]]] | [IS_FIREABLE [k56] & EX [~ [[IS_FIREABLE [k15] & IS_FIREABLE [k17]]]]]]

..
EG iterations: 1
.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: ~ [~ [[[AF [IS_FIREABLE [k45]] | ~ [~ [IS_FIREABLE [k49]]]] | [[~ [IS_FIREABLE [k11]] | [IS_FIREABLE [k42] & IS_FIREABLE [k39]]] | [~ [IS_FIREABLE [k19]] & [IS_FIREABLE [k6] | IS_FIREABLE [k58]]]]]]]
normalized: [[[[IS_FIREABLE [k6] | IS_FIREABLE [k58]] & ~ [IS_FIREABLE [k19]]] | [[IS_FIREABLE [k42] & IS_FIREABLE [k39]] | ~ [IS_FIREABLE [k11]]]] | [IS_FIREABLE [k49] | ~ [EG [~ [IS_FIREABLE [k45]]]]]]

.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: ~ [[[[IS_FIREABLE [k30] & EX [IS_FIREABLE [k54]]] | ~ [[[IS_FIREABLE [k52] & IS_FIREABLE [k12]] & [IS_FIREABLE [k50] | IS_FIREABLE [k38]]]]] & AX [[IS_FIREABLE [k34] & ~ [IS_FIREABLE [k12]]]]]]
normalized: ~ [[~ [EX [~ [[IS_FIREABLE [k34] & ~ [IS_FIREABLE [k12]]]]]] & [~ [[[IS_FIREABLE [k50] | IS_FIREABLE [k38]] & [IS_FIREABLE [k52] & IS_FIREABLE [k12]]]] | [IS_FIREABLE [k30] & EX [IS_FIREABLE [k54]]]]]]

..-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: ~ [~ [[[[IS_FIREABLE [k27] & IS_FIREABLE [k22]] | AX [IS_FIREABLE [k24]]] & [[[IS_FIREABLE [k28] | IS_FIREABLE [k28]] | [IS_FIREABLE [k52] & IS_FIREABLE [k47]]] & EF [IS_FIREABLE [k41]]]]]]
normalized: [[E [true U IS_FIREABLE [k41]] & [[IS_FIREABLE [k52] & IS_FIREABLE [k47]] | [IS_FIREABLE [k28] | IS_FIREABLE [k28]]]] & [~ [EX [~ [IS_FIREABLE [k24]]]] | [IS_FIREABLE [k27] & IS_FIREABLE [k22]]]]

.-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.007sec

checking: [E [EF [IS_FIREABLE [k25]] U [[IS_FIREABLE [k41] | IS_FIREABLE [k5]] | ~ [IS_FIREABLE [k61]]]] | E [[[IS_FIREABLE [k3] | IS_FIREABLE [k47]] & [IS_FIREABLE [k60] | IS_FIREABLE [k46]]] U [IS_FIREABLE [k11] & IS_FIREABLE [k45]]]]
normalized: [E [[[IS_FIREABLE [k60] | IS_FIREABLE [k46]] & [IS_FIREABLE [k3] | IS_FIREABLE [k47]]] U [IS_FIREABLE [k11] & IS_FIREABLE [k45]]] | E [E [true U IS_FIREABLE [k25]] U [~ [IS_FIREABLE [k61]] | [IS_FIREABLE [k41] | IS_FIREABLE [k5]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLFireability-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: [[[[[[IS_FIREABLE [k27] & IS_FIREABLE [k31]] & [IS_FIREABLE [k21] & IS_FIREABLE [k58]]] & AF [IS_FIREABLE [k36]]] & EF [IS_FIREABLE [k43]]] & ~ [[[[IS_FIREABLE [k34] | IS_FIREABLE [k37]] & [IS_FIREABLE [k50] & IS_FIREABLE [k39]]] & ~ [[IS_FIREABLE [k39] | IS_FIREABLE [t0]]]]]] & ~ [AF [[IS_FIREABLE [k28] | IS_FIREABLE [k61]]]]]
normalized: [EG [~ [[IS_FIREABLE [k28] | IS_FIREABLE [k61]]]] & [~ [[~ [[IS_FIREABLE [k39] | IS_FIREABLE [t0]]] & [[IS_FIREABLE [k50] & IS_FIREABLE [k39]] & [IS_FIREABLE [k34] | IS_FIREABLE [k37]]]]] & [E [true U IS_FIREABLE [k43]] & [~ [EG [~ [IS_FIREABLE [k36]]]] & [[IS_FIREABLE [k21] & IS_FIREABLE [k58]] & [IS_FIREABLE [k27] & IS_FIREABLE [k31]]]]]]]

.
EG iterations: 1
.
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLFireability-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.007sec


Total processing time: 0m 9.248sec


BK_STOP 1464784842499

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:882 (13), effective:52 (0)

initing FirstDep: 0m 0.000sec


iterations count:72 (1), effective:1 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:469 (7), effective:31 (0)

iterations count:64 (1), effective:0 (0)

iterations count:542 (8), effective:36 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-01"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-01.tgz
mv S_Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-01, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r173kn-ebro-146433144700013"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;