Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..............
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_Angiogenesis-PT-01, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r173kn-ebro-146433144700012
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-0
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-1
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-15
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-2
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-3
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-4
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-5
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-6
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-7
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-8
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-9

=== Now, execution of the tool begins

BK_START 1464784829587


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLCardinality.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_01
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.129sec


RS generation: 0m 0.011sec


-> reachability set: #nodes 244 (2.4e+02) #states 110



starting MCC model checker
--------------------------

checking: ~ [EF [3<=KdStarPgStarP2]]
normalized: ~ [E [true U 3<=KdStarPgStarP2]]

abstracting: (3<=KdStarPgStarP2) states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: 1<=GStarP3kP3
normalized: 1<=GStarP3kP3

abstracting: (1<=GStarP3kP3) states: 6
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: ~ [EF [1<=KdStarGStarP3kStarP3P2]]
normalized: ~ [E [true U 1<=KdStarGStarP3kStarP3P2]]

abstracting: (1<=KdStarGStarP3kStarP3P2) states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: Pip2<=KdStarG
normalized: Pip2<=KdStarG

abstracting: (Pip2<=KdStarG) states: 97
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: AX [KdStarGStarP3k<=Gab1]
normalized: ~ [EX [~ [KdStarGStarP3k<=Gab1]]]

abstracting: (KdStarGStarP3k<=Gab1) states: 97
.-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.001sec

checking: AX [[Pip3<=KdStarGStarP3kStarP2 & AG [1<=PtP3]]]
normalized: ~ [EX [~ [[Pip3<=KdStarGStarP3kStarP2 & ~ [E [true U ~ [1<=PtP3]]]]]]]

abstracting: (1<=PtP3) states: 10
abstracting: (Pip3<=KdStarGStarP3kStarP2) states: 100
.-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.004sec

checking: ~ [[EG [~ [KdStarGP3<=Gab1]] & 1<=GP3]]
normalized: ~ [[1<=GP3 & EG [~ [KdStarGP3<=Gab1]]]]

abstracting: (KdStarGP3<=Gab1) states: 110
.
EG iterations: 1
abstracting: (1<=GP3) states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: EG [[EX [KdStarGStarP3kP3<=P3k] & AX [KdStarG<=KdStarPg]]]
normalized: EG [[EX [KdStarGStarP3kP3<=P3k] & ~ [EX [~ [KdStarG<=KdStarPg]]]]]

abstracting: (KdStarG<=KdStarPg) states: 106
.abstracting: (KdStarGStarP3kP3<=P3k) states: 108
..
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.004sec

checking: [AG [~ [[KdStarGStarPgStar<=P3k & Pip2<=Pip3]]] & ~ [1<=KdStar]]
normalized: [~ [1<=KdStar] & ~ [E [true U [KdStarGStarPgStar<=P3k & Pip2<=Pip3]]]]

abstracting: (Pip2<=Pip3) states: 96
abstracting: (KdStarGStarPgStar<=P3k) states: 110
abstracting: (1<=KdStar) states: 10
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.002sec

checking: [A [GStarP3kP3<=AktStar U ~ [Akt<=KdStarPg]] & AX [EX [KdStarGStarP3kStarP3<=Pip3]]]
normalized: [~ [EX [~ [EX [KdStarGStarP3kStarP3<=Pip3]]]] & [~ [EG [Akt<=KdStarPg]] & ~ [E [Akt<=KdStarPg U [Akt<=KdStarPg & ~ [GStarP3kP3<=AktStar]]]]]]

abstracting: (GStarP3kP3<=AktStar) states: 107
abstracting: (Akt<=KdStarPg) states: 55
abstracting: (Akt<=KdStarPg) states: 55
abstracting: (Akt<=KdStarPg) states: 55
.
EG iterations: 1
abstracting: (KdStarGStarP3kStarP3<=Pip3) states: 108
..-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.006sec

checking: AX [~ [[[2<=KdStarGStarP3kP3 | 2<=GStarPgP3] | [Enz<=AktP3 | DAG<=Pip2]]]]
normalized: ~ [EX [[[2<=KdStarGStarP3kP3 | 2<=GStarPgP3] | [Enz<=AktP3 | DAG<=Pip2]]]]

abstracting: (DAG<=Pip2) states: 96
abstracting: (Enz<=AktP3) states: 19
abstracting: (2<=GStarPgP3) states: 0
abstracting: (2<=KdStarGStarP3kP3) states: 0
.-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: [2<=Pip2 | AF [[[3<=KdStarGStarP3kStarP2 | 1<=DAG] | [GStarP3<=P3k | KdStarPg<=GStarPgP3]]]]
normalized: [2<=Pip2 | ~ [EG [~ [[[3<=KdStarGStarP3kStarP2 | 1<=DAG] | [GStarP3<=P3k | KdStarPg<=GStarPgP3]]]]]]

abstracting: (KdStarPg<=GStarPgP3) states: 102
abstracting: (GStarP3<=P3k) states: 110
abstracting: (1<=DAG) states: 14
abstracting: (3<=KdStarGStarP3kStarP2) states: 0
.
EG iterations: 1
abstracting: (2<=Pip2) states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: [[[EX [3<=DAGE] & Pip2<=KdStarGStarPg] | [EG [Gab1<=KdStarGStarP3kStarP3] | AG [2<=KdStarGStarPgStar]]] | 2<=GStarPgP3]
normalized: [2<=GStarPgP3 | [[EG [Gab1<=KdStarGStarP3kStarP3] | ~ [E [true U ~ [2<=KdStarGStarPgStar]]]] | [Pip2<=KdStarGStarPg & EX [3<=DAGE]]]]

abstracting: (3<=DAGE) states: 0
.abstracting: (Pip2<=KdStarGStarPg) states: 98
abstracting: (2<=KdStarGStarPgStar) states: 0
abstracting: (Gab1<=KdStarGStarP3kStarP3) states: 97
.
EG iterations: 1
abstracting: (2<=GStarPgP3) states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: ~ [E [[KdStarPgStarP2<=PtP3P2 & P3k<=PtP3] U [KdStarGStarPg<=Gab1 & 1<=KdStarGStarP3kStarP3P2]]]
normalized: ~ [E [[KdStarPgStarP2<=PtP3P2 & P3k<=PtP3] U [KdStarGStarPg<=Gab1 & 1<=KdStarGStarP3kStarP3P2]]]

abstracting: (1<=KdStarGStarP3kStarP3P2) states: 0
abstracting: (KdStarGStarPg<=Gab1) states: 97
abstracting: (P3k<=PtP3) states: 44
abstracting: (KdStarPgStarP2<=PtP3P2) states: 109
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.000sec

checking: [EG [KdStarPg<=GP3] | [[AX [3<=KdStarPg] | [3<=GP3 | [KdStarGStar<=KdStarGStarPgStar & P3k<=KdStarGStarPgStarP2]]] | AF [[AktStar<=KdStarPgStar | PtP3<=PtP3]]]]
normalized: [[~ [EG [~ [[AktStar<=KdStarPgStar | PtP3<=PtP3]]]] | [~ [EX [~ [3<=KdStarPg]]] | [3<=GP3 | [KdStarGStar<=KdStarGStarPgStar & P3k<=KdStarGStarPgStarP2]]]] | EG [KdStarPg<=GP3]]

abstracting: (KdStarPg<=GP3) states: 102
.
EG iterations: 1
abstracting: (P3k<=KdStarGStarPgStarP2) states: 40
abstracting: (KdStarGStar<=KdStarGStarPgStar) states: 97
abstracting: (3<=GP3) states: 0
abstracting: (3<=KdStarPg) states: 0
.abstracting: (PtP3<=PtP3) states: 110
abstracting: (AktStar<=KdStarPgStar) states: 68
.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.003sec

checking: [[[1<=KdStarGStarP3kStar & EF [1<=KdStarGStarP3kStar]] | [KdStarGStar<=AktStar | [~ [3<=KdStarGStarPg] | ~ [KdStarGStar<=GStarPgP3]]]] & ~ [[[KdStarPgStarP2<=KdStarGStar & [PtP3P2<=KdStarGStarPgStarP2 | 3<=KdStarPgStar]] | 1<=AktStar]]]
normalized: [~ [[1<=AktStar | [KdStarPgStarP2<=KdStarGStar & [PtP3P2<=KdStarGStarPgStarP2 | 3<=KdStarPgStar]]]] & [[KdStarGStar<=AktStar | [~ [3<=KdStarGStarPg] | ~ [KdStarGStar<=GStarPgP3]]] | [1<=KdStarGStarP3kStar & E [true U 1<=KdStarGStarP3kStar]]]]

abstracting: (1<=KdStarGStarP3kStar) states: 13
abstracting: (1<=KdStarGStarP3kStar) states: 13
abstracting: (KdStarGStar<=GStarPgP3) states: 97
abstracting: (3<=KdStarGStarPg) states: 0
abstracting: (KdStarGStar<=AktStar) states: 103
abstracting: (3<=KdStarPgStar) states: 0
abstracting: (PtP3P2<=KdStarGStarPgStarP2) states: 110
abstracting: (KdStarPgStarP2<=KdStarGStar) states: 109
abstracting: (1<=AktStar) states: 44
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.007sec


Total processing time: 0m 8.806sec


BK_STOP 1464784838442

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:882 (13), effective:52 (0)

initing FirstDep: 0m 0.000sec


iterations count:77 (1), effective:1 (0)

iterations count:151 (2), effective:8 (0)

iterations count:74 (1), effective:1 (0)

iterations count:64 (1), effective:0 (0)

iterations count:424 (6), effective:25 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-01"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-01.tgz
mv S_Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-01, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r173kn-ebro-146433144700012"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;