Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............
=====================================================================
Generated by BenchKit 2-2979
Executing tool tapaalPAR
Input is S_Angiogenesis-PT-10, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r172kn-ebro-146433141100034
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1464674659717


*****************************************
TAPAAL onthefly-PAR performing ReachabilityCardinality search
*****************************************

verifypn -o mc -c 4 -n model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-0: EF ( ((not((1 <= "DAG")) and not(("KdStarGStarP3k" <= "Pg"))) and ((("Gab1" <= "KdStarGStarPgStar") and (3 <= "DAGE")) and ("KdStarGStarPgStarP3" <= "GStarP3kP3"))) )

query: EF ( ((not((1 <= "DAG")) and not(("KdStarGStarP3k" <= "Pg"))) and ((("Gab1" <= "KdStarGStarPgStar") and (3 <= "DAGE")) and ("KdStarGStarPgStarP3" <= "GStarP3kP3"))) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-0 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-1: EF ( ((not(("AktP3" <= "KdStarGStarP3")) or ((1 <= "Pten") or (1 <= "KdStarGStarPgStar"))) and (not((1 <= "KdStar")) and ((2 <= "P3k") or ("KdStarGStarP3" <= "DAG")))) )

query: EF ( ((not(("AktP3" <= "KdStarGStarP3")) or ((1 <= "Pten") or (1 <= "KdStarGStarPgStar"))) and (not((1 <= "KdStar")) and ((2 <= "P3k") or ("KdStarGStarP3" <= "DAG")))) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-1 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-2: not EF not ( (("KdStarGStarP3kStarP3" <= "KdStarGStarP3kP3") or ("Enz" <= "KdStarGStarPgStarP2")) )

query: EF not ( (("KdStarGStarP3kStarP3" <= "KdStarGStarP3kP3") or ("Enz" <= "KdStarGStarPgStarP2")) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-2 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-3: EF ( not(((("KdStarGStarP3" <= "KdStarPg") or (3 <= "DAG")) or (("KdStarGStar" <= "Pg") and ("KdStarGStar" <= "KdStarGStarPgStar")))) )

query: EF ( not(((("KdStarGStarP3" <= "KdStarPg") or (3 <= "DAG")) or (("KdStarGStar" <= "Pg") and ("KdStarGStar" <= "KdStarGStarPgStar")))) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-3 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-4: not EF not ( ((((1 <= "KdStarGStarP3kStarP2") or ("KdStarGStarPgStar" <= "KdStarPg")) or (3 <= "KdStar")) or ((("GStarP3kP3" <= "DAGE") and ("KdStarGP3" <= "DAG")) and not(("PtP2" <= "KdStarPgStar")))) )

query: EF not ( ((((1 <= "KdStarGStarP3kStarP2") or ("KdStarGStarPgStar" <= "KdStarPg")) or (3 <= "KdStar")) or ((("GStarP3kP3" <= "DAGE") and ("KdStarGP3" <= "DAG")) and not(("PtP2" <= "KdStarPgStar")))) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-4 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-5: not EF not ( (((3 <= "GStarPgP3") or (2 <= "P3k")) or (2 <= "Pg")) )

query: EF not ( (((3 <= "GStarPgP3") or (2 <= "P3k")) or (2 <= "Pg")) )
Angiogenesis-PT-10-ReachabilityCardinality-6: EF ( (3 <= "AktP3") )

query: EF ( (3 <= "AktP3") )
Angiogenesis-PT-10-ReachabilityCardinality-7: EF ( ((2 <= "KdStarGStarPgP3") or ("P3k" <= "KdStarGStarPgStar")) )

query: EF ( ((2 <= "KdStarGStarPgP3") or ("P3k" <= "KdStarGStarPgStar")) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-7 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-8: EF ( not(("KdStarGP3" <= "KdStarGStarPg")) )

query: EF ( not(("KdStarGP3" <= "KdStarGStarPg")) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-8 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-9: EF ( (not(((3 <= "Pg") or ("AktP3" <= "P3k"))) and (not((1 <= "P3k")) or (2 <= "GStarP3kP3"))) )

query: EF ( (not(((3 <= "Pg") or ("AktP3" <= "P3k"))) and (not((1 <= "P3k")) or (2 <= "GStarP3kP3"))) )
Angiogenesis-PT-10-ReachabilityCardinality-10: EF ( not((3 <= "P3k")) )

query: EF ( not((3 <= "P3k")) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-10 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-11: not EF not ( ("KdStarGStarP3kStarP2" <= "Akt") )

query: EF not ( ("KdStarGStarP3kStarP2" <= "Akt") )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-11 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-12: not EF not ( ((1 <= "Pip2") or not((1 <= "KdStarGStar"))) )

query: EF not ( ((1 <= "Pip2") or not((1 <= "KdStarGStar"))) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-12 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-13: EF ( (((("Enz" <= "KdStarGStarP3kP3") or ("KdStarGStarP3kP3" <= "KdStarGStarPgStar")) or not(("KdStarGStarPgStar" <= "KdStarGStarP3k"))) and ("Pg" <= "KdStarGStarP3")) )

query: EF ( (((("Enz" <= "KdStarGStarP3kP3") or ("KdStarGStarP3kP3" <= "KdStarGStarPgStar")) or not(("KdStarGStarPgStar" <= "KdStarGStarP3k"))) and ("Pg" <= "KdStarGStarP3")) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-13 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-14: not EF not ( not(("Akt" <= "KdStarGStarP3kStarP2")) )

query: EF not ( not(("Akt" <= "KdStarGStarP3kStarP2")) )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-14 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-15: not EF not ( ("KdStarGStarPgStarP3" <= "AktP3") )

query: EF not ( ("KdStarGStarPgStarP3" <= "AktP3") )
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-15 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-10-ReachabilityCardinality-0: EF ( ((not((1 <= "DAG")) and not(("KdStarGStarP3k" <= "Pg"))) and ((("Gab1" <= "KdStarGStarPgStar") and (3 <= "DAGE")) and ("KdStarGStarPgStarP3" <= "GStarP3kP3"))) )


BK_STOP 1464677470811

--------------------
content from stderr:

terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
/home/mcc/BenchKit/bin/onthefly.sh: line 24: 673 Aborted $VERIFYPN/verifypn-linux64 $1 -d "model.pnml" $2

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-10"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="tapaalPAR"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-10.tgz
mv S_Angiogenesis-PT-10 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool tapaalPAR"
echo " Input is S_Angiogenesis-PT-10, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r172kn-ebro-146433141100034"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;