Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
=====================================================================
Generated by BenchKit 2-2979
Executing tool tapaalPAR
Input is S_Angiogenesis-PT-05, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r172kn-ebro-146433141100025
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1464674282342


*****************************************
TAPAAL onthefly-PAR performing ReachabilityCardinality search
*****************************************

verifypn -o mc -c 4 -n model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-05-ReachabilityCardinality-0: EF ( not((("KdStarGStarP3kStarP2" <= "Pten") or (("KdStarGStarP3kStar" <= "KdStarGStarP3kStarP2") or ("KdStarGStarP3kStarP3P2" <= "AktP3")))) )

query: EF ( not((("KdStarGStarP3kStarP2" <= "Pten") or (("KdStarGStarP3kStar" <= "KdStarGStarP3kStarP2") or ("KdStarGStarP3kStarP3P2" <= "AktP3")))) )
Angiogenesis-PT-05-ReachabilityCardinality-1: EF ( ((((1 <= "KdStarGP3") and (1 <= "KdStarGStarP3kStarP2")) or (3 <= "GStarP3")) and not(((1 <= "KdStarGStarPgP3") and (2 <= "KdStarGStarP3kStarP2")))) )

query: EF ( ((((1 <= "KdStarGP3") and (1 <= "KdStarGStarP3kStarP2")) or (3 <= "GStarP3")) and not(((1 <= "KdStarGStarPgP3") and (2 <= "KdStarGStarP3kStarP2")))) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-1 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-2: not EF not ( not(not(("KdStarGStarP3kStarP3P2" <= "Pg"))) )

query: EF not ( not(not(("KdStarGStarP3kStarP3P2" <= "Pg"))) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-2 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-3: EF ( (not((("GStarP3" <= "AktP3") or (1 <= "Pg"))) and (2 <= "KdStarGStarPgStarP3")) )

query: EF ( (not((("GStarP3" <= "AktP3") or (1 <= "Pg"))) and (2 <= "KdStarGStarPgStarP3")) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-3 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-4: not EF not ( not((not(("GStarP3" <= "Pg")) and ((1 <= "AktP3") and (1 <= "KdStarGStarP3kStarP2")))) )

query: EF not ( not((not(("GStarP3" <= "Pg")) and ((1 <= "AktP3") and (1 <= "KdStarGStarP3kStarP2")))) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-4 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-5: EF ( ((not(("KdStarGStarPgStarP3" <= "KdStarGStar")) and not(("PtP3" <= "Pip2"))) and ("KdStarGStarPgStarP3P2" <= "Pip2")) )

query: EF ( ((not(("KdStarGStarPgStarP3" <= "KdStarGStar")) and not(("PtP3" <= "Pip2"))) and ("KdStarGStarPgStarP3P2" <= "Pip2")) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-5 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-6: not EF not ( (("KdStar" <= "Akt") or not(("KdStarGStarP3kP3" <= "PtP3"))) )

query: EF not ( (("KdStar" <= "Akt") or not(("KdStarGStarP3kP3" <= "PtP3"))) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-6 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-7: EF ( ((not(("KdStarGP3" <= "Pip2")) and ((2 <= "KdStarGStarP3k") or ("Akt" <= "DAG"))) and (not(("KdStarPgStarP2" <= "PtP2")) or not((2 <= "KdStarGStarPg")))) )

query: EF ( ((not(("KdStarGP3" <= "Pip2")) and ((2 <= "KdStarGStarP3k") or ("Akt" <= "DAG"))) and (not(("KdStarPgStarP2" <= "PtP2")) or not((2 <= "KdStarGStarPg")))) )
Angiogenesis-PT-05-ReachabilityCardinality-8: EF ( not(not((("KdStarPgStarP2" <= "KdStarGStarP3kP3") and (3 <= "DAGE")))) )

query: EF ( not(not((("KdStarPgStarP2" <= "KdStarGStarP3kP3") and (3 <= "DAGE")))) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-8 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-9: not EF not ( (not((("KdStarGStarP3kStarP2" <= "KdStarGP3") and (1 <= "Enz"))) or not((("Akt" <= "Pten") and (3 <= "Pip3")))) )

query: EF not ( (not((("KdStarGStarP3kStarP2" <= "KdStarGP3") and (1 <= "Enz"))) or not((("Akt" <= "Pten") and (3 <= "Pip3")))) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-9 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-10: not EF not ( not(((1 <= "KdStarGStarPgP3") and (("KdStarGStarP3kStarP2" <= "KdStarGStarPgStar") or (3 <= "GStarP3kP3")))) )

query: EF not ( not(((1 <= "KdStarGStarPgP3") and (("KdStarGStarP3kStarP2" <= "KdStarGStarPgStar") or (3 <= "GStarP3kP3")))) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-10 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-11: not EF not ( not((not((2 <= "AktP3")) and ((2 <= "KdStarGStarP3kStarP3") and ("Pip3" <= "GP3")))) )

query: EF not ( not((not((2 <= "AktP3")) and ((2 <= "KdStarGStarP3kStarP3") and ("Pip3" <= "GP3")))) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-11 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-12: EF ( (not(((3 <= "P3k") and ("KdStarGStarPgP3" <= "DAGE"))) and (((2 <= "Pg") and ("KdStar" <= "KdStarGStarPgP3")) or ((2 <= "KdStarPgStar") or (3 <= "KdStarGStar")))) )

query: EF ( (not(((3 <= "P3k") and ("KdStarGStarPgP3" <= "DAGE"))) and (((2 <= "Pg") and ("KdStar" <= "KdStarGStarPgP3")) or ((2 <= "KdStarPgStar") or (3 <= "KdStarGStar")))) )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-12 TRUE TECHNIQUES PARALLEL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.

Angiogenesis-PT-05-ReachabilityCardinality-13: not EF not ( (("KdStarGStarP3" <= "KdStarGStarP3kStarP3") or not(((2 <= "KdStarGP3") and ("Pg" <= "KdStarPgStarP2")))) )

query: EF not ( (("KdStarGStarP3" <= "KdStarGStarP3kStarP3") or not(((2 <= "KdStarGP3") and ("Pg" <= "KdStarPgStarP2")))) )
Angiogenesis-PT-05-ReachabilityCardinality-14: EF ( (((3 <= "KdStarGStarPgP3") and ((2 <= "DAGE") and ("P3k" <= "KdStarPgStar"))) and not((("PtP2" <= "GStarPgP3") and (3 <= "GStarP3kP3")))) )

query: EF ( (((3 <= "KdStarGStarPgP3") and ((2 <= "DAGE") and ("P3k" <= "KdStarPgStar"))) and not((("PtP2" <= "GStarPgP3") and (3 <= "GStarP3kP3")))) )
Angiogenesis-PT-05-ReachabilityCardinality-15: not EF not ( not((not(("KdStarGP3" <= "KdStarGStarPgStar")) and ((1 <= "PtP3") or (2 <= "DAGE")))) )

query: EF not ( not((not(("KdStarGP3" <= "KdStarGStarPgStar")) and ((1 <= "PtP3") or (2 <= "DAGE")))) )
Angiogenesis-PT-05-ReachabilityCardinality-0: EF ( not((("KdStarGStarP3kStarP2" <= "Pten") or (("KdStarGStarP3kStar" <= "KdStarGStarP3kStarP2") or ("KdStarGStarP3kStarP3P2" <= "AktP3")))) )


BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-05"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="tapaalPAR"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-05.tgz
mv S_Angiogenesis-PT-05 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool tapaalPAR"
echo " Input is S_Angiogenesis-PT-05, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r172kn-ebro-146433141100025"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;