Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..............
=====================================================================
Generated by BenchKit 2-2979
Executing tool lola
Input is S_Angiogenesis-PT-50, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r170kn-ebro-146433132200069
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-0
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-1
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-10
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-11
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-12
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-13
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-14
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-15
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-2
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-3
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-4
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-5
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-6
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-7
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-8
FORMULA_NAME Angiogenesis-PT-50-LTLFireability-9

=== Now, execution of the tool begins

BK_START 1464449538657

bkconf 3600
===========================================================================================
===========================================================================================
S_Angiogenesis-PT-50: translating Petri net model.pnml into LoLA format
S_Angiogenesis-PT-50: translating formula LTLFireability into LoLA format
===========================================================================================
===========================================================================================
/home/mcc/BenchKit/bin/pnml2lola.py model.pnml > model.pnml.lola
/home/mcc/BenchKit/bin/formula2lola.py LTLFireability.xml
touch formulae;


in benchkit_head lolaszeit 3539
LTLFireability @ S_Angiogenesis-PT-50
FORMULA Angiogenesis-PT-50-LTLFireability-0 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT SAT_SMT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL
FORMULA Angiogenesis-PT-50-LTLFireability-1 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT SAT_SMT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL
FORMULA Angiogenesis-PT-50-LTLFireability-2 CANNOT_COMPUTE
FORMULA Angiogenesis-PT-50-LTLFireability-3 CANNOT_COMPUTE
FORMULA Angiogenesis-PT-50-LTLFireability-4 CANNOT_COMPUTE
FORMULA Angiogenesis-PT-50-LTLFireability-5 CANNOT_COMPUTE
FORMULA Angiogenesis-PT-50-LTLFireability-6 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT SAT_SMT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL
FORMULA Angiogenesis-PT-50-LTLFireability-7 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT SAT_SMT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL
FORMULA Angiogenesis-PT-50-LTLFireability-8 CANNOT_COMPUTE
FORMULA Angiogenesis-PT-50-LTLFireability-9 CANNOT_COMPUTE
FORMULA Angiogenesis-PT-50-LTLFireability-10 CANNOT_COMPUTE
FORMULA Angiogenesis-PT-50-LTLFireability-11 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT SAT_SMT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL
FORMULA Angiogenesis-PT-50-LTLFireability-12 CANNOT_COMPUTE
FORMULA Angiogenesis-PT-50-LTLFireability-13 FALSE TECHNIQUES PARALLEL_PROCESSING EXPLICIT SAT_SMT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL
FORMULA Angiogenesis-PT-50-LTLFireability-14 CANNOT_COMPUTE
FORMULA Angiogenesis-PT-50-LTLFireability-15 CANNOT_COMPUTE
lola: LoLA will run for 3539 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 103/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 39 places, 64 transitions, 31 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 54 transition conflict sets
lola: TASK
lola: reading formula from Angiogenesis-PT-50-LTLFireability.task
lola: read: AX (FIREABLE(k38)) : AG (FIREABLE(k39)) : A((FIREABLE(k8) U FIREABLE(k57)) U FIREABLE(k59)) : A((G (FIREABLE(k33)) U FIREABLE(k44)) U G (FIREABLE(k41))) : A(X (X (FIREABLE(k34))) U X ((FIREABLE(k2) U FIREABLE(k8)))) : AX (G ((X (FIREABLE(k55)) U X (FIREABLE(k42))))) : AX (FIREABLE(k5)) : AF (G (F (FIREABLE(k61)))) : AX (G (X (FIREABLE(k48)))) : AX (F (G (X (X (FIREABLE(k44)))))) : AX ((X (FIREABLE... (shortened)
lola: formula length: 590
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AX (FIREABLE(k38))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: AX(FIREABLE(k38))
lola: processed formula length: 17
lola: 8 rewrites
lola: formula mentions 0 of 39 places; total mentions: 0
lola: closed formula file Angiogenesis-PT-50-LTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: RUNNING
lola: CTL formula contains 0 significant temporal operators and needs 0 bytes of payload
lola: SUBRESULT
lola: result: no
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 1 will run for 235 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AG (FIREABLE(k39))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using reachability graph (--search=depth)
lola: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A((FIREABLE(k8) U FIREABLE(k57)) U FIREABLE(k59))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 3 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 3 will run for 256 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A((G (FIREABLE(k33)) U FIREABLE(k44)) U G (FIREABLE(k41)))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 8 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 4 will run for 256 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AX ((X (FIREABLE(k34)) U (FIREABLE(k2) U FIREABLE(k8))))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 8 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 5 will run for 256 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AX (G (X ((FIREABLE(k55) U FIREABLE(k42)))))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 4 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 6 will run for 262 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AX (FIREABLE(k5))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: AX(FIREABLE(k5))
lola: processed formula length: 16
lola: 8 rewrites
lola: formula mentions 0 of 39 places; total mentions: 0
lola: closed formula file Angiogenesis-PT-50-LTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: RUNNING
lola: CTL formula contains 0 significant temporal operators and needs 0 bytes of payload
lola: SUBRESULT
lola: result: no
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 7 will run for 291 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AG (F (FIREABLE(k61)))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 2 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: The net does not satisfy the given formula (language of the product automaton is nonempty).
lola: ========================================
lola: subprocess 8 will run for 328 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AX (G (X (FIREABLE(k48))))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 4 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 9 will run for 347 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AX (F (G (X (X (FIREABLE(k44))))))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 5 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 10 will run for 359 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AX ((X (FIREABLE(k30)) U G (F (FIREABLE(k29)))))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 7 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 11 will run for 386 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AF (FIREABLE(k41))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: A(TRUE U FIREABLE(k41))
lola: processed formula length: 23
lola: 8 rewrites
lola: formula mentions 0 of 39 places; total mentions: 0
lola: closed formula file Angiogenesis-PT-50-LTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: SUBRESULT
lola: result: no
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 12 will run for 481 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AF ((FIREABLE(k7) U FIREABLE(k57)))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 1 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 13 will run for 569 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: FIREABLE(t1)
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula with 0 atomic propositions
lola: closed formula file Angiogenesis-PT-50-LTLFireability.task
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: The net violates the given property already in its initial state.
lola: ========================================
lola: subprocess 14 will run for 854 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AG (F (FIREABLE(k15)))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 2 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 15 will run for 1520 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: AX (X ((FIREABLE(k54) U X (FIREABLE(k5)))))
lola: ========================================
lola: SUBTASK
lola: checking LTL
lola: transforming LTL-Formula into a Büchi-Automaton
lola: the resulting Büchi automaton has 8 states
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: not using stubborn set method (--stubborn=off)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: RESULT
lola: summary: no no unknown unknown unknown unknown no no unknown unknown unknown no unknown no unknown unknown

BK_STOP 1464451806012

--------------------
content from stderr:

parsing of model.pnml complete

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-50"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="lola"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-50.tgz
mv S_Angiogenesis-PT-50 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool lola"
echo " Input is S_Angiogenesis-PT-50, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r170kn-ebro-146433132200069"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;