Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
........
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is S_MAPK-PT-320, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r161kn-blw3-146416418700349
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-0
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-1
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-10
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-11
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-12
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-13
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-14
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-15
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-2
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-3
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-4
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-5
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-6
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-7
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-8
FORMULA_NAME MAPK-PT-320-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1464341640016


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityCardinality.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: MAPK_PT_320
(NrP: 22 NrTr: 30 NrArc: 90)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 3.911sec


RS generation: 1m41.695sec


-> reachability set: #nodes 174862 (1.7e+05) #states 2,616,258,717,809,759,012,724,668,961 (27)



starting MCC model checker
--------------------------

checking: AG [2<=Phase1]
normalized: ~ [E [true U ~ [2<=Phase1]]]

abstracting: (2<=Phase1) states: 2,613,615,784,351,969,256,439,988,014 (27)

FORMULA MAPK-PT-320-ReachabilityCardinality-0 CANNOT_COMPUTE

MC time: 7m32.727sec

checking: AG [~ [2<=MEKPP_Phase2]]
normalized: ~ [E [true U 2<=MEKPP_Phase2]]


FORMULA MAPK-PT-320-ReachabilityCardinality-2 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: AG [3<=ERK]
normalized: ~ [E [true U ~ [3<=ERK]]]


before gc: list nodes free: 37

after gc: idd nodes used:174883, unused:63825117; list nodes free:681048597
abstracting: (3<=ERK) states: 2,471,512,451,477,760,321,076,636,020 (27)

FORMULA MAPK-PT-320-ReachabilityCardinality-3 CANNOT_COMPUTE


BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

10577 24355 38132 24092 24544 24526 48140 50512 55950 61410 63926 75526 76968 90738 90778 90818 90858 77645 90081 77989 77354 77398 82089 79092 103896 116214 129901 157253 131823 127224 172544 132904 135649 138195 163099 160124 143734 144817 146373 147419 166216
iterations count:41790 (1393), effective:6880 (229)

initing FirstDep: 0m 0.000sec

std::bad_alloc

std::bad_alloc

162226std::bad_alloc

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_MAPK-PT-320"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/home/hulinhub/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_MAPK-PT-320.tgz
mv S_MAPK-PT-320 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is S_MAPK-PT-320, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r161kn-blw3-146416418700349"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;