Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-2979
Executing tool lola
Input is S_MAPK-PT-160, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r158kn-blw3-146416415100335
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-160-UpperBounds-0
FORMULA_NAME MAPK-PT-160-UpperBounds-1
FORMULA_NAME MAPK-PT-160-UpperBounds-10
FORMULA_NAME MAPK-PT-160-UpperBounds-11
FORMULA_NAME MAPK-PT-160-UpperBounds-12
FORMULA_NAME MAPK-PT-160-UpperBounds-13
FORMULA_NAME MAPK-PT-160-UpperBounds-14
FORMULA_NAME MAPK-PT-160-UpperBounds-15
FORMULA_NAME MAPK-PT-160-UpperBounds-2
FORMULA_NAME MAPK-PT-160-UpperBounds-3
FORMULA_NAME MAPK-PT-160-UpperBounds-4
FORMULA_NAME MAPK-PT-160-UpperBounds-5
FORMULA_NAME MAPK-PT-160-UpperBounds-6
FORMULA_NAME MAPK-PT-160-UpperBounds-7
FORMULA_NAME MAPK-PT-160-UpperBounds-8
FORMULA_NAME MAPK-PT-160-UpperBounds-9

=== Now, execution of the tool begins

BK_START 1464223561364

bkconf 3600
===========================================================================================
===========================================================================================
S_MAPK-PT-160: translating Petri net model.pnml into LoLA format
S_MAPK-PT-160: translating formula UpperBounds into LoLA format
===========================================================================================
===========================================================================================
/home/mcc/BenchKit/bin/pnml2lola.py model.pnml > model.pnml.lola
/home/mcc/BenchKit/bin/formula2lola.py UpperBounds.xml
touch formulae;


in benchkit_head lolaszeit 3540
UpperBounds @ S_MAPK-PT-160
FORMULA MAPK-PT-160-UpperBounds-0 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-1 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-2 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-3 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-4 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-5 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-6 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-7 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-8 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-9 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-10 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-11 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-12 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-13 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-14 CANNOT_COMPUTE
FORMULA MAPK-PT-160-UpperBounds-15 CANNOT_COMPUTE
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 52/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 22 places, 30 transitions, 15 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 25 transition conflict sets
lola: TASK
lola: reading formula from MAPK-PT-160-UpperBounds.task
lola: read: MAX(MEKP - 0) : MAX(ERKP_Phase3 - 0) : MAX(MEKPP_Phase2 - 0) : MAX(Raf - 0) : MAX(Raf - 0) : MAX(ERKPP_Phase3 - 0) : MAX(ERKPP_Phase3 - 0) : MAX(RafP_Phase1 - 0) : MAX(ERK_MEKPP - 0) : MAX(Phase3 - 0) : MAX(ERKP - 0) : MAX(MEK_RafP - 0) : MAX(RasGTP - 0) : MAX(RasGTP - 0) : MAX(Phase2 - 0) : MAX(ERKPP - 0)
lola: formula length: 307
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(MEKP - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 1 will run for 225 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(ERKP_Phase3 - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 2 will run for 232 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(MEKPP_Phase2 - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 3 will run for 232 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(Raf - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 4 will run for 240 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(Raf - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 5 will run for 249 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(ERKPP_Phase3 - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 6 will run for 265 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(ERKPP_Phase3 - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 7 will run for 283 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(RafP_Phase1 - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 8 will run for 293 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(ERK_MEKPP - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 9 will run for 304 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(Phase3 - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 10 will run for 327 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(ERKP - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 11 will run for 369 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(MEK_RafP - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 12 will run for 428 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(RasGTP - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 13 will run for 505 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(RasGTP - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 14 will run for 659 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(Phase2 - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 15 will run for 1000 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: MAX(ERKPP - 0)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method (--stubborn)
lola: RUNNING
lola: Child process aborted or communication problem between parent and child process
lola: RESULT
lola: summary: unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown

BK_STOP 1464226204456

--------------------
content from stderr:

parsing of model.pnml complete

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_MAPK-PT-160"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="lola"
export BK_RESULT_DIR="/home/hulinhub/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_MAPK-PT-160.tgz
mv S_MAPK-PT-160 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool lola"
echo " Input is S_MAPK-PT-160, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r158kn-blw3-146416415100335"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;