Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-2979
Executing tool itstools
Input is MAPK-PT-040, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r061kn-blw3-146358895500319
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-040-CTLFireability-0
FORMULA_NAME MAPK-PT-040-CTLFireability-1
FORMULA_NAME MAPK-PT-040-CTLFireability-10
FORMULA_NAME MAPK-PT-040-CTLFireability-11
FORMULA_NAME MAPK-PT-040-CTLFireability-12
FORMULA_NAME MAPK-PT-040-CTLFireability-13
FORMULA_NAME MAPK-PT-040-CTLFireability-14
FORMULA_NAME MAPK-PT-040-CTLFireability-15
FORMULA_NAME MAPK-PT-040-CTLFireability-2
FORMULA_NAME MAPK-PT-040-CTLFireability-3
FORMULA_NAME MAPK-PT-040-CTLFireability-4
FORMULA_NAME MAPK-PT-040-CTLFireability-5
FORMULA_NAME MAPK-PT-040-CTLFireability-6
FORMULA_NAME MAPK-PT-040-CTLFireability-7
FORMULA_NAME MAPK-PT-040-CTLFireability-8
FORMULA_NAME MAPK-PT-040-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1463956619254


its-ctl command run as :

/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201605191313/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,4.78293e+14,42.3635,754328,2,436663,5,4.39333e+06,6,0,121,4.39826e+06,0


Converting to forward existential form...Done !
original formula: AG(EX(AF((Raf>=1 * RasGTP>=1))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX(!(EG(!((Raf>=1 * RasGTP>=1)))))))] = FALSE
Checking (exact) 0 :[(FwdU(Init,TRUE) * !(EX(!(EG(!((Raf>=1 * RasGTP>=1)))))))] = FALSE
Checking (exact) 0 :(FwdU(Init,TRUE) * !(EX(!(EG(!((Raf>=1 * RasGTP>=1)))))))
Checking (exact) 1 :!(EX(!(EG(!((Raf>=1 * RasGTP>=1))))))
Checking (exact) 1 :EX(!(EG(!((Raf>=1 * RasGTP>=1)))))
Checking (exact) 1 :!(EG(!((Raf>=1 * RasGTP>=1))))
Checking (exact) 1 :EG(!((Raf>=1 * RasGTP>=1)))
Checking (exact) 1 :FwdU(Init,TRUE)
Checking (exact) 1 :Init
(forward)formula 0,0,107.284,1343084,1,0,10,5.38667e+06,22,3,1074,5.6967e+06,7
FORMULA MAPK-PT-040-CTLFireability-0 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF((EX(ERKPP_Phase3>=1) * AX((MEKP_Phase2>=1 * ERKP_MEKPP>=1))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * EX(ERKPP_Phase3>=1)) * !(EX(!((MEKP_Phase2>=1 * ERKP_MEKPP>=1)))))] != FALSE
Checking (exact) 0 :[((FwdU(Init,TRUE) * EX(ERKPP_Phase3>=1)) * !(EX(!((MEKP_Phase2>=1 * ERKP_MEKPP>=1)))))] != FALSE
Checking (exact) 0 :((FwdU(Init,TRUE) * EX(ERKPP_Phase3>=1)) * !(EX(!((MEKP_Phase2>=1 * ERKP_MEKPP>=1)))))
Checking (exact) 1 :!(EX(!((MEKP_Phase2>=1 * ERKP_MEKPP>=1))))
Checking (exact) 1 :EX(!((MEKP_Phase2>=1 * ERKP_MEKPP>=1)))
Checking (exact) 1 :(FwdU(Init,TRUE) * EX(ERKPP_Phase3>=1))
Checking (exact) 1 :EX(ERKPP_Phase3>=1)
Checking (exact) 1 :FwdU(Init,TRUE)
Checking (exact) 1 :Init
(forward)formula 1,1,204.94,2753660,1,0,16,1.2594e+07,28,6,1079,1.57271e+07,11
FORMULA MAPK-PT-040-CTLFireability-1 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG((EF(!((ERK>=1 * MEKPP>=1))) + !(AF(Raf_RasGTP>=1))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * !(!(!(EG(!(Raf_RasGTP>=1)))))) * !(E(TRUE U !((ERK>=1 * MEKPP>=1)))))] = FALSE
Checking (exact) 0 :[((FwdU(Init,TRUE) * !(!(!(EG(!(Raf_RasGTP>=1)))))) * !(E(TRUE U !((ERK>=1 * MEKPP>=1)))))] = FALSE
Checking (exact) 0 :((FwdU(Init,TRUE) * !(!(!(EG(!(Raf_RasGTP>=1)))))) * !(E(TRUE U !((ERK>=1 * MEKPP>=1)))))
Checking (exact) 1 :!(E(TRUE U !((ERK>=1 * MEKPP>=1))))
Checking (exact) 1 :E(TRUE U !((ERK>=1 * MEKPP>=1)))
(forward)formula 2,1,267.52,2761612,1,0,17,1.29024e+07,10,6,908,1.61213e+07,2
FORMULA MAPK-PT-040-CTLFireability-2 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF((!(((MEKP_Phase2>=1 * MEK_RafP>=1) * (RafP_Phase1>=1 * MEK_RafP>=1))) * !(EF((Raf>=1 * RasGTP>=1)))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * !(((MEKP_Phase2>=1 * MEK_RafP>=1) * (RafP_Phase1>=1 * MEK_RafP>=1)))) * !(E(TRUE U (Raf>=1 * RasGTP>=1))))] != FALSE
Checking (exact) 0 :[((FwdU(Init,TRUE) * !(((MEKP_Phase2>=1 * MEK_RafP>=1) * (RafP_Phase1>=1 * MEK_RafP>=1)))) * !(E(TRUE U (Raf>=1 * RasGTP>=1))))] != FALSE
Checking (exact) 0 :((FwdU(Init,TRUE) * !(((MEKP_Phase2>=1 * MEK_RafP>=1) * (RafP_Phase1>=1 * MEK_RafP>=1)))) * !(E(TRUE U (Raf>=1 * RasGTP>=1))))
Checking (exact) 1 :!(E(TRUE U (Raf>=1 * RasGTP>=1)))
Checking (exact) 1 :E(TRUE U (Raf>=1 * RasGTP>=1))
(forward)formula 3,0,267.768,2761612,1,0,17,1.29024e+07,14,6,910,1.61213e+07,5
FORMULA MAPK-PT-040-CTLFireability-3 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (!(EG(!(ERKP_Phase3>=1))) * (Raf>=1 * RasGTP>=1))
=> equivalent forward existential formula: ([FwdG(Init,!(ERKP_Phase3>=1))] = FALSE * [(Init * !((Raf>=1 * RasGTP>=1)))] = FALSE)
Checking (exact) 0 :([FwdG(Init,!(ERKP_Phase3>=1))] = FALSE * [(Init * !((Raf>=1 * RasGTP>=1)))] = FALSE)
Checking (exact) 1 :[(Init * !((Raf>=1 * RasGTP>=1)))] = FALSE
Checking (exact) 0 :(Init * !((Raf>=1 * RasGTP>=1)))
Checking (exact) 1 :[FwdG(Init,!(ERKP_Phase3>=1))] = FALSE
Checking (exact) 0 :FwdG(Init,!(ERKP_Phase3>=1))
Checking (exact) 1 :Init
Hit Full ! (commute/partial/dont) 27/0/3
(forward)formula 4,0,295.649,2761612,1,0,17,1.29024e+07,25,6,999,1.61213e+07,11
FORMULA MAPK-PT-040-CTLFireability-4 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((A(MEKPP_Phase2>=1 U ((Raf>=1 * RasGTP>=1) * (Phase2>=1 * MEKP>=1))) * ((AG(RafP_Phase1>=1) * ((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1))) + (AX((Phase3>=1 * ERKPP>=1)) + AF(ERKP_MEKPP>=1)))) * AX(!(ERK_MEKPP>=1)))
=> equivalent forward existential formula: ((([(FwdU(Init,!(((Raf>=1 * RasGTP>=1) * (Phase2>=1 * MEKP>=1)))) * (!(MEKPP_Phase2>=1) * !(((Raf>=1 * RasGTP>=1) * (Phase2>=1 * MEKP>=1)))))] = FALSE * [FwdG(Init,!(((Raf>=1 * RasGTP>=1) * (Phase2>=1 * MEKP>=1))))] = FALSE) * [FwdG(((Init * !((!(E(TRUE U !(RafP_Phase1>=1))) * ((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1))))) * !(!(EX(!((Phase3>=1 * ERKPP>=1)))))),!(ERKP_MEKPP>=1))] = FALSE) * [(EY(Init) * ERK_MEKPP>=1)] = FALSE)
Checking (exact) 0 :((([(FwdU(Init,!(((Raf>=1 * RasGTP>=1) * (Phase2>=1 * MEKP>=1)))) * (!(MEKPP_Phase2>=1) * !(((Raf>=1 * RasGTP>=1) * (Phase2>=1 * MEKP>=1)))))] = FALSE * [FwdG(Init,!(((Raf>=1 * RasGTP>=1) * (Phase2>=1 * MEKP>=1))))] = FALSE) * [FwdG(((Init * !((!(E(TRUE U !(RafP_Phase1>=1))) * ((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1))))) * !(!(EX(!((Phase3>=1 * ERKPP>=1)))))),!(ERKP_MEKPP>=1))] = FALSE) * [(EY(Init) * ERK_MEKPP>=1)] = FALSE)
Checking (exact) 1 :[(EY(Init) * ERK_MEKPP>=1)] = FALSE
Checking (exact) 0 :(EY(Init) * ERK_MEKPP>=1)
Checking (exact) 1 :ERK_MEKPP>=1
Checking (exact) 1 :EY(Init)
Checking (exact) 1 :Init
Checking (exact) 1 :(([(FwdU(Init,!(((Raf>=1 * RasGTP>=1) * (Phase2>=1 * MEKP>=1)))) * (!(MEKPP_Phase2>=1) * !(((Raf>=1 * RasGTP>=1) * (Phase2>=1 * MEKP>=1)))))] = FALSE * [FwdG(Init,!(((Raf>=1 * RasGTP>=1) * (Phase2>=1 * MEKP>=1))))] = FALSE) * [FwdG(((Init * !((!(E(TRUE U !(RafP_Phase1>=1))) * ((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1))))) * !(!(EX(!((Phase3>=1 * ERKPP>=1)))))),!(ERKP_MEKPP>=1))] = FALSE)
Checking (exact) 1 :[FwdG(((Init * !((!(E(TRUE U !(RafP_Phase1>=1))) * ((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1))))) * !(!(EX(!((Phase3>=1 * ERKPP>=1)))))),!(ERKP_MEKPP>=1))] = FALSE
Checking (exact) 0 :FwdG(((Init * !((!(E(TRUE U !(RafP_Phase1>=1))) * ((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1))))) * !(!(EX(!((Phase3>=1 * ERKPP>=1)))))),!(ERKP_MEKPP>=1))
Checking (exact) 1 :((Init * !((!(E(TRUE U !(RafP_Phase1>=1))) * ((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1))))) * !(!(EX(!((Phase3>=1 * ERKPP>=1))))))
Checking (exact) 1 :!(!(EX(!((Phase3>=1 * ERKPP>=1)))))
Checking (exact) 1 :EX(!((Phase3>=1 * ERKPP>=1)))
Checking (exact) 1 :(Init * !((!(E(TRUE U !(RafP_Phase1>=1))) * ((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1)))))
Checking (exact) 1 :!((!(E(TRUE U !(RafP_Phase1>=1))) * ((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1))))
Checking (exact) 1 :(!(E(TRUE U !(RafP_Phase1>=1))) * ((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1)))
Checking (exact) 1 :((RafP_Phase1>=1 + ERK_MEKPP>=1) * (MEKPP_Phase2>=1 * ERK_MEKPP>=1))
Checking (exact) 1 :(MEKPP_Phase2>=1 * ERK_MEKPP>=1)
Checking (exact) 1 :ERK_MEKPP>=1
Checking (exact) 1 :!(E(TRUE U !(RafP_Phase1>=1)))
Checking (exact) 1 :E(TRUE U !(RafP_Phase1>=1))
Checking (exact) 1 :Init
Hit Full ! (commute/partial/dont) 27/0/3
(forward)formula 5,0,332.669,2761616,1,0,20,1.29024e+07,47,7,1043,1.61213e+07,24
FORMULA MAPK-PT-040-CTLFireability-5 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AF(AX(((ERKPP_Phase3>=1 * (Phase1>=1 * RafP>=1)) * !((Raf>=1 * RasGTP>=1)))))
=> equivalent forward existential formula: [FwdG(Init,!(!(EX(!(((ERKPP_Phase3>=1 * (Phase1>=1 * RafP>=1)) * !((Raf>=1 * RasGTP>=1))))))))] = FALSE
Checking (exact) 0 :[FwdG(Init,!(!(EX(!(((ERKPP_Phase3>=1 * (Phase1>=1 * RafP>=1)) * !((Raf>=1 * RasGTP>=1))))))))] = FALSE
Checking (exact) 0 :FwdG(Init,!(!(EX(!(((ERKPP_Phase3>=1 * (Phase1>=1 * RafP>=1)) * !((Raf>=1 * RasGTP>=1))))))))
Checking (exact) 1 :Init
Checking (exact) 1 :!(!(EX(!(((ERKPP_Phase3>=1 * (Phase1>=1 * RafP>=1)) * !((Raf>=1 * RasGTP>=1)))))))
Checking (exact) 1 :EX(!(((ERKPP_Phase3>=1 * (Phase1>=1 * RafP>=1)) * !((Raf>=1 * RasGTP>=1)))))
COULD_NOT_COMPUTE

BK_STOP 1463960129278

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its
+ ulimit -s 65536
+ java -Dosgi.requiredJavaVersion=1.6 -XX:MaxPermSize=512m -Xss8m -Xms40m -Xmx8192m -Declipse.pde.launch=true -Dfile.encoding=UTF-8 -classpath /home/mcc/BenchKit//eclipse/plugins/org.eclipse.equinox.launcher_1.3.100.v20150511-1540.jar org.eclipse.equinox.launcher.Main -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -nl en_US -consoleLog -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512m; support was removed in 8.0
May 22, 2016 10:37:01 PM fr.lip6.move.gal.application.Application transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 22, 2016 10:37:01 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 24 ms
May 22, 2016 10:37:01 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
May 22, 2016 10:37:01 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
May 22, 2016 10:37:01 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 29 ms
May 22, 2016 10:37:01 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.gal : 9 ms
May 22, 2016 10:37:01 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms
May 22, 2016 11:35:27 PM fr.lip6.move.gal.itstools.ProcessController$1 run
WARNING: null
java.io.IOException: Pipe broken
at java.io.PipedInputStream.read(PipedInputStream.java:321)
at java.io.PipedInputStream.read(PipedInputStream.java:377)
at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
at java.io.InputStreamReader.read(InputStreamReader.java:184)
at java.io.BufferedReader.fill(BufferedReader.java:161)
at java.io.BufferedReader.readLine(BufferedReader.java:324)
at java.io.BufferedReader.readLine(BufferedReader.java:389)
at fr.lip6.move.gal.application.Application$ITSInterpreter.run(Application.java:460)
at java.lang.Thread.run(Thread.java:745)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-040"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/home/hulinhub/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-040.tgz
mv MAPK-PT-040 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool itstools"
echo " Input is MAPK-PT-040, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r061kn-blw3-146358895500319"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;