Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-2979
Executing tool itstools
Input is MAPK-PT-020, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r061kn-blw3-146358895500308
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-020-UpperBounds-0
FORMULA_NAME MAPK-PT-020-UpperBounds-1
FORMULA_NAME MAPK-PT-020-UpperBounds-10
FORMULA_NAME MAPK-PT-020-UpperBounds-11
FORMULA_NAME MAPK-PT-020-UpperBounds-12
FORMULA_NAME MAPK-PT-020-UpperBounds-13
FORMULA_NAME MAPK-PT-020-UpperBounds-14
FORMULA_NAME MAPK-PT-020-UpperBounds-15
FORMULA_NAME MAPK-PT-020-UpperBounds-2
FORMULA_NAME MAPK-PT-020-UpperBounds-3
FORMULA_NAME MAPK-PT-020-UpperBounds-4
FORMULA_NAME MAPK-PT-020-UpperBounds-5
FORMULA_NAME MAPK-PT-020-UpperBounds-6
FORMULA_NAME MAPK-PT-020-UpperBounds-7
FORMULA_NAME MAPK-PT-020-UpperBounds-8
FORMULA_NAME MAPK-PT-020-UpperBounds-9

=== Now, execution of the tool begins

BK_START 1463956138341


its-reach command run as :

/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201605191313/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.gal -t CGAL -maxbound MEKPP_Phase2,MEK,ERKP,Phase3,Raf,MEKP,ERKPP_Phase3,ERKPP,ERKP_MEKPP,RafP,ERK
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPK\_PT\_020\_flat,8.81258e+10,2.90665,72480,2,40643,5,394539,6,0,121,395362,0
Total reachable state count : 88125763956

Bounds of variable : 0 <= MEKPP_Phase2 <= 10
FORMULA MAPK-PT-020-UpperBounds-15 10 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Bounds of variable : 0 <= MEK <= 10
FORMULA MAPK-PT-020-UpperBounds-1 10 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
FORMULA MAPK-PT-020-UpperBounds-6 10 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Bounds of variable : 0 <= ERKP <= 15
FORMULA MAPK-PT-020-UpperBounds-9 15 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Bounds of variable : 0 <= Phase3 <= 15
FORMULA MAPK-PT-020-UpperBounds-3 15 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Bounds of variable : 0 <= Raf <= 20
FORMULA MAPK-PT-020-UpperBounds-0 20 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
FORMULA MAPK-PT-020-UpperBounds-12 20 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Bounds of variable : 0 <= MEKP <= 10
FORMULA MAPK-PT-020-UpperBounds-8 10 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
FORMULA MAPK-PT-020-UpperBounds-14 10 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Bounds of variable : 0 <= ERKPP_Phase3 <= 15
FORMULA MAPK-PT-020-UpperBounds-4 15 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Bounds of variable : 0 <= ERKPP <= 15
FORMULA MAPK-PT-020-UpperBounds-13 15 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Bounds of variable : 0 <= ERKP_MEKPP <= 10
FORMULA MAPK-PT-020-UpperBounds-2 10 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
FORMULA MAPK-PT-020-UpperBounds-10 10 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Bounds of variable : 0 <= RafP <= 20
FORMULA MAPK-PT-020-UpperBounds-5 20 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
FORMULA MAPK-PT-020-UpperBounds-11 20 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Bounds of variable : 0 <= ERK <= 15
FORMULA MAPK-PT-020-UpperBounds-7 15 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

BK_STOP 1463956144026

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ UpperBounds = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its
+ ulimit -s 65536
+ java -Dosgi.requiredJavaVersion=1.6 -XX:MaxPermSize=512m -Xss8m -Xms40m -Xmx8192m -Declipse.pde.launch=true -Dfile.encoding=UTF-8 -classpath /home/mcc/BenchKit//eclipse/plugins/org.eclipse.equinox.launcher_1.3.100.v20150511-1540.jar org.eclipse.equinox.launcher.Main -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -nl en_US -consoleLog -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512m; support was removed in 8.0
May 22, 2016 10:29:00 PM fr.lip6.move.gal.application.Application transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 22, 2016 10:29:00 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 26 ms
May 22, 2016 10:29:00 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
May 22, 2016 10:29:00 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
May 22, 2016 10:29:00 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 38 ms
May 22, 2016 10:29:00 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.gal : 8 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-020"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/home/hulinhub/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-020.tgz
mv MAPK-PT-020 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool itstools"
echo " Input is MAPK-PT-020, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r061kn-blw3-146358895500308"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;