Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................................................
=====================================================================
Generated by BenchKit 2-2979
Executing tool itstools
Input is DatabaseWithMutex-COL-04, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r013kn-qhx2-146347844800128
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-0
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-1
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-10
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-11
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-12
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-13
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-14
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-15
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-2
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-3
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-4
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-5
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-6
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-7
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-8
FORMULA_NAME DatabaseWithMutex-COL-04-UpperBounds-9

=== Now, execution of the tool begins

BK_START 1463961892995

!SESSION 2016-05-23 00:04:53.615 -----------------------------------------------
eclipse.buildId=4.5.2.M20160212-1500
java.version=1.8.0_77
java.vendor=Oracle Corporation
BootLoader constants: OS=linux, ARCH=x86_64, WS=gtk, NL=en_US
Framework arguments: -application fr.lip6.move.gal.application.pnmcc -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its
Command-line arguments: -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -consoleLog -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its

!ENTRY org.eclipse.osgi 4 0 2016-05-23 00:05:00.123
!MESSAGE Application error
!STACK 1
java.lang.ArrayIndexOutOfBoundsException: -1
at org.eclipse.emf.common.util.BasicEList.get(BasicEList.java:348)
at fr.lip6.move.gal.instantiate.CompositeBuilder.galToCompositeWithPartition(CompositeBuilder.java:399)
at fr.lip6.move.gal.instantiate.CompositeBuilder.decomposeWithOrder(CompositeBuilder.java:112)
at fr.lip6.move.gal.application.Application.applyOrder(Application.java:745)
at fr.lip6.move.gal.application.Application.start(Application.java:307)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:380)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:235)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:669)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:608)
at org.eclipse.equinox.launcher.Main.run(Main.java:1515)
at org.eclipse.equinox.launcher.Main.main(Main.java:1488)
An error has occurred. See the log file
/home/mcc/BenchKit/workspace/.metadata/.log.

BK_STOP 1463961901298

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ UpperBounds = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its
+ ulimit -s 65536
+ java -Dosgi.requiredJavaVersion=1.6 -XX:MaxPermSize=512m -Xss8m -Xms40m -Xmx8192m -Declipse.pde.launch=true -Dfile.encoding=UTF-8 -classpath /home/mcc/BenchKit//eclipse/plugins/org.eclipse.equinox.launcher_1.3.100.v20150511-1540.jar org.eclipse.equinox.launcher.Main -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -nl en_US -consoleLog -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512m; support was removed in 8.0
May 23, 2016 12:04:57 AM fr.lip6.move.gal.application.Application transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 23, 2016 12:04:57 AM fr.lip6.move.gal.pnml.togal.PnmlToGalTransformer transform
INFO: Detected file is not PT type :http://www.pnml.org/version-2009/grammar/symmetricnet
May 23, 2016 12:04:59 AM fr.lip6.move.gal.pnml.togal.PnmlToGalTransformer transform
INFO: Load time of PNML (colored model parsed with PNMLFW) : 1672 ms
May 23, 2016 12:04:59 AM fr.lip6.move.gal.pnml.togal.HLGALTransformer handlePage
INFO: Transformed 11 places.
May 23, 2016 12:04:59 AM fr.lip6.move.gal.pnml.togal.HLGALTransformer handlePage
INFO: read order :VarOrder [vars=[RecBuff[0], RecBuff[1], RecBuff[2], RecBuff[3], RecBuff[4], RecBuff[5], RecBuff[6], RecBuff[7], RecBuff[8], RecBuff[9], RecBuff[10], RecBuff[11], RecBuff[12], RecBuff[13], RecBuff[14], RecBuff[15], all_active[0], all_active[1], all_active[2], all_active[3], Active[0], Active[1], Active[2], Active[3], Active[4], Active[5], Active[6], Active[7], Active[8], Active[9], Active[10], Active[11], Active[12], Active[13], Active[14], Active[15], Mutex[0], Mutex[1], Mutex[2], Mutex[3], Message[0], Message[1], Message[2], Message[3], Message[4], Message[5], Message[6], Message[7], Message[8], Message[9], Message[10], Message[11], Message[12], Message[13], Message[14], Message[15], Modify[0], Modify[1], Modify[2], Modify[3], Modify[4], Modify[5], Modify[6], Modify[7], Modify[8], Modify[9], Modify[10], Modify[11], Modify[12], Modify[13], Modify[14], Modify[15], MesBuffReply[0], MesBuffReply[1], MesBuffReply[2], MesBuffReply[3], MesBuffReply[4], MesBuffReply[5], MesBuffReply[6], MesBuffReply[7], MesBuffReply[8], MesBuffReply[9], MesBuffReply[10], MesBuffReply[11], MesBuffReply[12], MesBuffReply[13], MesBuffReply[14], MesBuffReply[15], Acknowledge[0], Acknowledge[1], Acknowledge[2], Acknowledge[3], Acknowledge[4], Acknowledge[5], Acknowledge[6], Acknowledge[7], Acknowledge[8], Acknowledge[9], Acknowledge[10], Acknowledge[11], Acknowledge[12], Acknowledge[13], Acknowledge[14], Acknowledge[15], all_passive[0], all_passive[1], all_passive[2], all_passive[3], updating[0], updating[1], updating[2], updating[3], updating[4], updating[5], updating[6], updating[7], updating[8], updating[9], updating[10], updating[11], updating[12], updating[13], updating[14], updating[15], WaitMutex[0], WaitMutex[1], WaitMutex[2], WaitMutex[3], WaitMutex[4], WaitMutex[5], WaitMutex[6], WaitMutex[7], WaitMutex[8], WaitMutex[9], WaitMutex[10], WaitMutex[11], WaitMutex[12], WaitMutex[13], WaitMutex[14], WaitMutex[15]]]
May 23, 2016 12:04:59 AM fr.lip6.move.gal.pnml.togal.HLGALTransformer handlePage
INFO: sort/places :site->all_active,all_passive,
SF->RecBuff,Active,Message,Modify,MesBuffReply,Acknowledge,updating,WaitMutex,
file->Mutex,

May 23, 2016 12:04:59 AM fr.lip6.move.gal.pnml.togal.HLGALTransformer handlePage
INFO: Transformed 8 transitions.
May 23, 2016 12:04:59 AM fr.lip6.move.gal.pnml.togal.PnmlToGalTransformer transform
INFO: Computed order based on color domains : CompositeGalOrder [children=[VarOrder [vars=[all_active[0], all_passive[0]]], VarOrder [vars=[all_active[1], all_passive[1]]], VarOrder [vars=[all_active[2], all_passive[2]]], VarOrder [vars=[all_active[3], all_passive[3]]], VarOrder [vars=[RecBuff[0], Active[0], Message[0], Modify[0], MesBuffReply[0], Acknowledge[0], updating[0], WaitMutex[0]]], VarOrder [vars=[RecBuff[1], Active[1], Message[1], Modify[1], MesBuffReply[1], Acknowledge[1], updating[1], WaitMutex[1]]], VarOrder [vars=[RecBuff[2], Active[2], Message[2], Modify[2], MesBuffReply[2], Acknowledge[2], updating[2], WaitMutex[2]]], VarOrder [vars=[RecBuff[3], Active[3], Message[3], Modify[3], MesBuffReply[3], Acknowledge[3], updating[3], WaitMutex[3]]], VarOrder [vars=[RecBuff[4], Active[4], Message[4], Modify[4], MesBuffReply[4], Acknowledge[4], updating[4], WaitMutex[4]]], VarOrder [vars=[RecBuff[5], Active[5], Message[5], Modify[5], MesBuffReply[5], Acknowledge[5], updating[5], WaitMutex[5]]], VarOrder [vars=[RecBuff[6], Active[6], Message[6], Modify[6], MesBuffReply[6], Acknowledge[6], updating[6], WaitMutex[6]]], VarOrder [vars=[RecBuff[7], Active[7], Message[7], Modify[7], MesBuffReply[7], Acknowledge[7], updating[7], WaitMutex[7]]], VarOrder [vars=[RecBuff[8], Active[8], Message[8], Modify[8], MesBuffReply[8], Acknowledge[8], updating[8], WaitMutex[8]]], VarOrder [vars=[RecBuff[9], Active[9], Message[9], Modify[9], MesBuffReply[9], Acknowledge[9], updating[9], WaitMutex[9]]], VarOrder [vars=[RecBuff[10], Active[10], Message[10], Modify[10], MesBuffReply[10], Acknowledge[10], updating[10], WaitMutex[10]]], VarOrder [vars=[RecBuff[11], Active[11], Message[11], Modify[11], MesBuffReply[11], Acknowledge[11], updating[11], WaitMutex[11]]], VarOrder [vars=[RecBuff[12], Active[12], Message[12], Modify[12], MesBuffReply[12], Acknowledge[12], updating[12], WaitMutex[12]]], VarOrder [vars=[RecBuff[13], Active[13], Message[13], Modify[13], MesBuffReply[13], Acknowledge[13], updating[13], WaitMutex[13]]], VarOrder [vars=[RecBuff[14], Active[14], Message[14], Modify[14], MesBuffReply[14], Acknowledge[14], updating[14], WaitMutex[14]]], VarOrder [vars=[RecBuff[15], Active[15], Message[15], Modify[15], MesBuffReply[15], Acknowledge[15], updating[15], WaitMutex[15]]], VarOrder [vars=[Mutex[0]]], VarOrder [vars=[Mutex[1]]], VarOrder [vars=[Mutex[2]]], VarOrder [vars=[Mutex[3]]]]]
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 188 ms
May 23, 2016 12:04:59 AM fr.lip6.move.gal.application.Application applyOrder
INFO: Applying decomposition
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 45 ms
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Partition obtained :[all_active[0], all_passive[0], ],[all_active[1], all_passive[1], ],[all_active[2], all_passive[2], ],[all_active[3], all_passive[3], ],[RecBuff[0], Active[0], Message[0], Modify[0], MesBuffReply[0], Acknowledge[0], updating[0], WaitMutex[0], ],[RecBuff[1], Active[1], Message[1], Modify[1], MesBuffReply[1], Acknowledge[1], updating[1], WaitMutex[1], ],[RecBuff[2], Active[2], Message[2], Modify[2], MesBuffReply[2], Acknowledge[2], updating[2], WaitMutex[2], ],[RecBuff[3], Active[3], Message[3], Modify[3], MesBuffReply[3], Acknowledge[3], updating[3], WaitMutex[3], ],[RecBuff[4], Active[4], Message[4], Modify[4], MesBuffReply[4], Acknowledge[4], updating[4], WaitMutex[4], ],[RecBuff[5], Active[5], Message[5], Modify[5], MesBuffReply[5], Acknowledge[5], updating[5], WaitMutex[5], ],[RecBuff[6], Active[6], Message[6], Modify[6], MesBuffReply[6], Acknowledge[6], updating[6], WaitMutex[6], ],[RecBuff[7], Active[7], Message[7], Modify[7], MesBuffReply[7], Acknowledge[7], updating[7], WaitMutex[7], ],[RecBuff[8], Active[8], Message[8], Modify[8], MesBuffReply[8], Acknowledge[8], updating[8], WaitMutex[8], ],[RecBuff[9], Active[9], Message[9], Modify[9], MesBuffReply[9], Acknowledge[9], updating[9], WaitMutex[9], ],[RecBuff[10], Active[10], Message[10], Modify[10], MesBuffReply[10], Acknowledge[10], updating[10], WaitMutex[10], ],[RecBuff[11], Active[11], Message[11], Modify[11], MesBuffReply[11], Acknowledge[11], updating[11], WaitMutex[11], ],[RecBuff[12], Active[12], Message[12], Modify[12], MesBuffReply[12], Acknowledge[12], updating[12], WaitMutex[12], ],[RecBuff[13], Active[13], Message[13], Modify[13], MesBuffReply[13], Acknowledge[13], updating[13], WaitMutex[13], ],[RecBuff[14], Active[14], Message[14], Modify[14], MesBuffReply[14], Acknowledge[14], updating[14], WaitMutex[14], ],[RecBuff[15], Active[15], Message[15], Modify[15], MesBuffReply[15], Acknowledge[15], updating[15], WaitMutex[15], ],[Mutex[0], ],[Mutex[1], ],[Mutex[2], ],[Mutex[3], ],

May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array RecBuff to variables to allow decomposition.
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArrayAsVariables
WARNING: could not rewrite array : RecBuff
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array all_active to variables to allow decomposition.
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArrayAsVariables
WARNING: could not rewrite array : all_active
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array Active to variables to allow decomposition.
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArrayAsVariables
WARNING: could not rewrite array : Active
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array Mutex to variables to allow decomposition.
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array Message to variables to allow decomposition.
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArrayAsVariables
WARNING: could not rewrite array : Message
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array Modify to variables to allow decomposition.
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArrayAsVariables
WARNING: could not rewrite array : Modify
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array MesBuffReply to variables to allow decomposition.
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArrayAsVariables
WARNING: could not rewrite array : MesBuffReply
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array Acknowledge to variables to allow decomposition.
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArrayAsVariables
WARNING: could not rewrite array : Acknowledge
May 23, 2016 12:04:59 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array all_passive to variables to allow decomposition.
May 23, 2016 12:05:00 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array updating to variables to allow decomposition.
May 23, 2016 12:05:00 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting array WaitMutex to variables to allow decomposition.
May 23, 2016 12:05:00 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArrayAsVariables
WARNING: could not rewrite array : WaitMutex

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="DatabaseWithMutex-COL-04"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/home/fko/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/DatabaseWithMutex-COL-04.tgz
mv DatabaseWithMutex-COL-04 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool itstools"
echo " Input is DatabaseWithMutex-COL-04, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r013kn-qhx2-146347844800128"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;