Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
=====================================================================
Generated by BenchKit 2-2979
Executing tool pecan
Input is Angiogenesis-PT-50, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r009kn-ebro-146347679300068
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-0
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-1
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-10
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-11
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-12
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-13
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-14
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-15
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-2
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-3
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-4
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-5
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-6
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-7
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-8
FORMULA_NAME Angiogenesis-PT-50-LTLCardinality-9

=== Now, execution of the tool begins

BK_START 1465417359717

=====================================================================
Generated by BenchKit MCC2016
Executing tool pecan:
Test is Angiogenesis-PT-50, examination is LTLCardinality
=====================================================================

--------------------
content from stdout:

START 1465417359
Xlib: extension "RANDR" missing on display ":99".
AngiogenesisPT50Too many heap sections: Increase MAXHINCR or MAX_HEAP_SECTS
Stacktrace:

at (wrapper managed-to-native) object.__icall_wrapper_mono_string_alloc (intptr) <0xffffffff>
at (wrapper alloc) object.Alloc (intptr,int) <0xffffffff>
at string.Concat (string,string) <0x0005f>
at PAT.Common.Classes.Expressions.Valuation.GetID () <0x0016b>
at PAT.Common.Classes.Expressions.Valuation.GetID (string) <0x00013>
at PAT.PN.LTS.PNConfiguration.GetID () <0x00075>
at PAT.Common.Classes.ModuleInterface.ConfigurationBase.GetIDWithEvent () <0x00013>
at PAT.Common.Classes.SemanticModels.LTS.Assertion.AssertionLTL.TarjanModelChecking () <0x00bb1>
at PAT.Common.Classes.SemanticModels.LTS.Assertion.AssertionLTL.RunVerification () <0x0020f>
at PAT.Common.Classes.ModuleInterface.AssertionBase.ModelChecking () <0x00012>
at PAT.Common.Classes.ModuleInterface.AssertionBase.InternalStart () <0x00077>
at PAT.Console.Program.RunOneSpec (string,string,System.IO.StreamWriter,System.Text.StringBuilder,bool,bool,int,int,string) <0x00187>
at PAT.Console.Program.Main (string[]) <0x0152f>
at (wrapper runtime-invoke) .runtime_invoke_void_object (object,intptr,intptr,intptr) <0xffffffff>

Native stacktrace:

/usr/bin/mono() [0x80e16fc]
[0xb77c340c]
[0xb77c3424]
/lib/i386-linux-gnu/libc.so.6(gsignal+0x4f) [0xb75df20f]
/lib/i386-linux-gnu/libc.so.6(abort+0x175) [0xb75e2855]
/usr/bin/mono() [0x8223e76]
/usr/bin/mono() [0x821cb24]
/usr/bin/mono() [0x821cd3a]
/usr/bin/mono() [0x821cff8]
/usr/bin/mono() [0x821d13a]
/usr/bin/mono() [0x821fb39]
/usr/bin/mono() [0x8220890]
/usr/bin/mono() [0x8226743]
/usr/bin/mono(mono_string_new_size+0x45) [0x81a67e5]
/usr/bin/mono() [0x81a6888]
[0xb7083940]
[0xb7083904]
[0xb708dca0]
[0xb3d01364]
[0xb3d011dc]
[0xb3d01116]
[0xb3d0107c]
[0xb3cfe20a]
[0xb3cfd4c0]
[0xb3cfd253]
[0xb3cfc298]
[0xb5dbc100]
[0xb7080370]
[0xb708089f]
/usr/bin/mono() [0x8064c2c]

Debug info from gdb:

Could not attach to process. If your uid matches the uid of the target
process, check the setting of /proc/sys/kernel/yama/ptrace_scope, or try
again as the root user. For more details, see /etc/sysctl.d/10-ptrace.conf
ptrace: Operation not permitted.
No threads.

=================================================================
Got a SIGABRT while executing native code. This usually indicates
a fatal error in the mono runtime or one of the native libraries
used by your application.
=================================================================

Aborted (core dumped)
FORMULA Angiogenesis-PT-50-LTLCardinality-0
FORMULA Angiogenesis-PT-50-LTLCardinality-1
FORMULA Angiogenesis-PT-50-LTLCardinality-2
FORMULA Angiogenesis-PT-50-LTLCardinality-3
FORMULA Angiogenesis-PT-50-LTLCardinality-4
FORMULA Angiogenesis-PT-50-LTLCardinality-5
FORMULA Angiogenesis-PT-50-LTLCardinality-6
FORMULA Angiogenesis-PT-50-LTLCardinality-7
FORMULA Angiogenesis-PT-50-LTLCardinality-8
FORMULA Angiogenesis-PT-50-LTLCardinality-9
FORMULA Angiogenesis-PT-50-LTLCardinality-10
FORMULA Angiogenesis-PT-50-LTLCardinality-11
FORMULA Angiogenesis-PT-50-LTLCardinality-12
FORMULA Angiogenesis-PT-50-LTLCardinality-13
FORMULA Angiogenesis-PT-50-LTLCardinality-14
FORMULA Angiogenesis-PT-50-LTLCardinality-15
STOP 1465417452

--------------------
content from stderr:


--------------------
content from /users/gast00/fkordon/BK_RESULTS/OUTPUTS/BenchKit_head_log_file.1827:


BK_STOP 1465417452712

--------------------
content from stderr:

cat: /users/gast00/fkordon/BK_RESULTS/OUTPUTS/STDERR: No such file or directory

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-50"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="pecan"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-50.tgz
mv Angiogenesis-PT-50 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool pecan"
echo " Input is Angiogenesis-PT-50, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r009kn-ebro-146347679300068"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;