Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is Angiogenesis-PT-15, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r005kn-ebro-146347672600039
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-0
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-1
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-15
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-2
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-3
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-4
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-5
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-6
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-7
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-8
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-9

=== Now, execution of the tool begins

BK_START 1463590772051


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLCardinality.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.398sec


RS generation: 2m32.898sec


-> reachability set: #nodes 648270 (6.5e+05) #states 1,115,538,966,669,107 (15)



starting MCC model checker
--------------------------

checking: EF [AG [~ [3<=PtP3P2]]]
normalized: E [true U ~ [E [true U 3<=PtP3P2]]]

abstracting: (3<=PtP3P2) states: 12,242,578,560,961 (13)
-> the formula is TRUE

FORMULA Angiogenesis-PT-15-CTLCardinality-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 29m39.838sec

checking: AG [KdStarGStarP3kStarP3P2<=KdStarGStarPgP3]
normalized: ~ [E [true U ~ [KdStarGStarP3kStarP3P2<=KdStarGStarPgP3]]]

abstracting: (KdStarGStarP3kStarP3P2<=KdStarGStarPgP3) states: 987,601,084,798,973 (14)
-> the formula is FALSE

FORMULA Angiogenesis-PT-15-CTLCardinality-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 13m23.992sec

checking: EX [[~ [~ [1<=AktStar]] | EF [2<=GStarP3kP3]]]
normalized: EX [[1<=AktStar | E [true U 2<=GStarP3kP3]]]

abstracting: (2<=GStarP3kP3) states: 189,384,283,964,589 (14)
abstracting: (1<=AktStar) states: 1,041,003,457,755,963 (15)
.-> the formula is TRUE

FORMULA Angiogenesis-PT-15-CTLCardinality-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 10m45.618sec

checking: AG [EF [KdStarG<=AktP3]]
normalized: ~ [E [true U ~ [E [true U KdStarG<=AktP3]]]]

abstracting: (KdStarG<=AktP3) states: 709,092,978,688,250 (14)

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

3472 7642 9876 7774 23444 42756 64193 57311 120540 495661 687343 708357 694302 681596 670328 660953 653843 648258
iterations count:18034 (281), effective:1362 (21)

initing FirstDep: 0m 0.000sec

889032 1465405 1300338 1071915 845942 739053
iterations count:6139 (95), effective:463 (7)
28915 126159 223997 293987 277395 494957 433882 487351 476271 497726 543772 735760 664057 660776 655557
iterations count:15135 (236), effective:1255 (19)
850909
iterations count:1977 (30), effective:141 (2)
661480 670450
iterations count:2425 (37), effective:178 (2)

iterations count:94 (1), effective:15 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is Angiogenesis-PT-15, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r005kn-ebro-146347672600039"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;