Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is Angiogenesis-PT-10, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r005kn-ebro-146347672600036
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-0
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-1
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-15
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-2
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-3
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-4
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-5
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-6
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-7
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-8
FORMULA_NAME Angiogenesis-PT-10-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1463590770326


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_10
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.930sec


RS generation: 0m17.560sec


-> reachability set: #nodes 128274 (1.3e+05) #states 822,645,885,495 (11)



starting MCC model checker
--------------------------

checking: AG [~ [IS_FIREABLE [k12]]]
normalized: ~ [E [true U IS_FIREABLE [k12]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m42.254sec

checking: EF [IS_FIREABLE [k11]]
normalized: E [true U IS_FIREABLE [k11]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m31.936sec

checking: EF [IS_FIREABLE [k22]]
normalized: E [true U IS_FIREABLE [k22]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.388sec

checking: EF [[IS_FIREABLE [k50] | IS_FIREABLE [k11]]]
normalized: E [true U [IS_FIREABLE [k50] | IS_FIREABLE [k11]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m10.283sec

checking: AG [~ [[IS_FIREABLE [k55] & IS_FIREABLE [k19]]]]
normalized: ~ [E [true U [IS_FIREABLE [k55] & IS_FIREABLE [k19]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m48.390sec

checking: AG [~ [[~ [[IS_FIREABLE [k63] | IS_FIREABLE [k35]]] & ~ [~ [IS_FIREABLE [k25]]]]]]
normalized: ~ [E [true U [IS_FIREABLE [k25] & ~ [[IS_FIREABLE [k63] | IS_FIREABLE [k35]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m25.801sec

checking: EF [[IS_FIREABLE [k46] & [IS_FIREABLE [k32] & IS_FIREABLE [k8]]]]
normalized: E [true U [IS_FIREABLE [k46] & [IS_FIREABLE [k32] & IS_FIREABLE [k8]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m39.972sec

checking: EF [~ [[IS_FIREABLE [t0] | ~ [[IS_FIREABLE [k13] & IS_FIREABLE [k47]]]]]]
normalized: E [true U ~ [[IS_FIREABLE [t0] | ~ [[IS_FIREABLE [k13] & IS_FIREABLE [k47]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m46.198sec

checking: EF [[IS_FIREABLE [k46] & ~ [[IS_FIREABLE [k33] | [IS_FIREABLE [k9] | IS_FIREABLE [k36]]]]]]
normalized: E [true U [IS_FIREABLE [k46] & ~ [[IS_FIREABLE [k33] | [IS_FIREABLE [k9] | IS_FIREABLE [k36]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m17.305sec

checking: EF [~ [~ [[[IS_FIREABLE [k16] | IS_FIREABLE [k23]] & [IS_FIREABLE [k26] & IS_FIREABLE [k54]]]]]]
normalized: E [true U [[IS_FIREABLE [k26] & IS_FIREABLE [k54]] & [IS_FIREABLE [k16] | IS_FIREABLE [k23]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m22.113sec

checking: EF [[~ [[~ [IS_FIREABLE [k34]] | ~ [IS_FIREABLE [k50]]]] & [IS_FIREABLE [k22] | ~ [~ [IS_FIREABLE [k29]]]]]]
normalized: E [true U [[IS_FIREABLE [k22] | IS_FIREABLE [k29]] & ~ [[~ [IS_FIREABLE [k50]] | ~ [IS_FIREABLE [k34]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m45.268sec

checking: AG [~ [[IS_FIREABLE [k49] & [~ [IS_FIREABLE [k14]] | [IS_FIREABLE [k63] | IS_FIREABLE [k41]]]]]]
normalized: ~ [E [true U [IS_FIREABLE [k49] & [[IS_FIREABLE [k63] | IS_FIREABLE [k41]] | ~ [IS_FIREABLE [k14]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m49.965sec

checking: AG [~ [[[[IS_FIREABLE [k47] | IS_FIREABLE [k53]] & [IS_FIREABLE [k57] & IS_FIREABLE [k63]]] & IS_FIREABLE [k18]]]]
normalized: ~ [E [true U [IS_FIREABLE [k18] & [[IS_FIREABLE [k57] & IS_FIREABLE [k63]] & [IS_FIREABLE [k47] | IS_FIREABLE [k53]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m38.009sec

checking: EF [[[IS_FIREABLE [k61] | IS_FIREABLE [k29]] & [IS_FIREABLE [k14] | [~ [IS_FIREABLE [k47]] & [IS_FIREABLE [k53] & IS_FIREABLE [k32]]]]]]
normalized: E [true U [[IS_FIREABLE [k14] | [[IS_FIREABLE [k53] & IS_FIREABLE [k32]] & ~ [IS_FIREABLE [k47]]]] & [IS_FIREABLE [k61] | IS_FIREABLE [k29]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 2m27.656sec

checking: AG [[IS_FIREABLE [k52] | [[[IS_FIREABLE [k23] | IS_FIREABLE [k28]] | [IS_FIREABLE [k16] | IS_FIREABLE [k56]]] | ~ [~ [IS_FIREABLE [k62]]]]]]
normalized: ~ [E [true U ~ [[IS_FIREABLE [k52] | [IS_FIREABLE [k62] | [[IS_FIREABLE [k16] | IS_FIREABLE [k56]] | [IS_FIREABLE [k23] | IS_FIREABLE [k28]]]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m36.631sec

checking: EF [[[IS_FIREABLE [k60] & [[IS_FIREABLE [k16] & IS_FIREABLE [k44]] | IS_FIREABLE [k6]]] & [[~ [IS_FIREABLE [k17]] & IS_FIREABLE [k14]] & ~ [[IS_FIREABLE [k23] & IS_FIREABLE [k48]]]]]]
normalized: E [true U [[~ [[IS_FIREABLE [k23] & IS_FIREABLE [k48]]] & [IS_FIREABLE [k14] & ~ [IS_FIREABLE [k17]]]] & [IS_FIREABLE [k60] & [IS_FIREABLE [k6] | [IS_FIREABLE [k16] & IS_FIREABLE [k44]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-10-ReachabilityFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 3m16.720sec


Total processing time: 19m 2.474sec


BK_STOP 1463591913082

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

3968 3382 5295 11703 17108 31307 124827 133681 131288 129623 128662
iterations count:11953 (186), effective:901 (14)

initing FirstDep: 0m 0.000sec

130680
iterations count:1045 (16), effective:67 (1)
149134
iterations count:1064 (16), effective:70 (1)
149134
iterations count:1064 (16), effective:70 (1)
132355
iterations count:1060 (16), effective:68 (1)
158556 147059
iterations count:2141 (33), effective:152 (2)
169791 147067
iterations count:2161 (33), effective:143 (2)
122916 208432 231603 208055 176545
iterations count:5303 (82), effective:397 (6)
183798 162228 142118
iterations count:3141 (49), effective:243 (3)
191598
iterations count:1997 (31), effective:194 (3)
161724 189161 171293 147010
iterations count:4026 (62), effective:299 (4)
131285 157065 161107
iterations count:3892 (60), effective:289 (4)
132412
iterations count:1222 (19), effective:106 (1)
158829 173551 146980
iterations count:3289 (51), effective:238 (3)
185603 149004
iterations count:2426 (37), effective:192 (3)
128659 132471 132050 128270
iterations count:4052 (63), effective:313 (4)
144814 158309 201949 219527 217805 172480
iterations count:6796 (106), effective:517 (8)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-10"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-10.tgz
mv Angiogenesis-PT-10 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is Angiogenesis-PT-10, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r005kn-ebro-146347672600036"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;