fond
Model Checking Contest @ Petri Nets 2016
6th edition, Toruń, Poland, June 21, 2016
Execution of r005kn-ebro-146347672600021
Last Updated
June 30, 2016

About the Execution of Marcie for Angiogenesis-PT-05

Execution Summary
Max Memory
Used (MB)
Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
5610.700 38504.00 38601.00 50.30 FFTTFTTTFTFTFTFT normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
=====================================================================
Generated by BenchKit 2-2979
Executing tool marcie
Input is Angiogenesis-PT-05, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r005kn-ebro-146347672600021
=====================================================================


--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-0
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-1
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-15
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-2
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-3
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-4
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-5
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-6
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-7
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-8
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-9

=== Now, execution of the tool begins

BK_START 1463590754317


Marcie rev. 8535M (built: crohr on 2016-04-27)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLCardinality.xml --mcc-mode --memory=6 --suppress

parse successfull
net created successfully

Net: Angiogenesis_PT_05
(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m 0.000sec

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

init dd package: 0m 6.127sec


RS generation: 0m 0.858sec


-> reachability set: #nodes 10921 (1.1e+04) #states 42,734,935 (7)



starting MCC model checker
--------------------------

checking: ~ [EF [3<=KdStarGStarP3kStar]]
normalized: ~ [E [true U 3<=KdStarGStarP3kStar]]

abstracting: (3<=KdStarGStarP3kStar) states: 512,541 (5)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.582sec

checking: A [EX [3<=PtP2] U EF [1<=KdStarGStarPgP3]]
normalized: [~ [EG [~ [E [true U 1<=KdStarGStarPgP3]]]] & ~ [E [~ [E [true U 1<=KdStarGStarPgP3]] U [~ [E [true U 1<=KdStarGStarPgP3]] & ~ [EX [3<=PtP2]]]]]]

abstracting: (3<=PtP2) states: 719,420 (5)
.abstracting: (1<=KdStarGStarPgP3) states: 4,166,196 (6)
abstracting: (1<=KdStarGStarPgP3) states: 4,166,196 (6)
abstracting: (1<=KdStarGStarPgP3) states: 4,166,196 (6)
.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.231sec

checking: AG [EG [[1<=KdStarGStarPg | 3<=Akt]]]
normalized: ~ [E [true U ~ [EG [[1<=KdStarGStarPg | 3<=Akt]]]]]

abstracting: (3<=Akt) states: 19,822,700 (7)
abstracting: (1<=KdStarGStarPg) states: 12,421,596 (7)
.
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.452sec

checking: AG [EX [[3<=KdStarGStarPgStarP3 | 1<=P3k]]]
normalized: ~ [E [true U ~ [EX [[3<=KdStarGStarPgStarP3 | 1<=P3k]]]]]

abstracting: (1<=P3k) states: 42,575,177 (7)
abstracting: (3<=KdStarGStarPgStarP3) states: 15,826 (4)
.-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.913sec

checking: AG [Gab1<=Gab1]
normalized: ~ [E [true U ~ [Gab1<=Gab1]]]

abstracting: (Gab1<=Gab1) states: 42,734,935 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.020sec

checking: [EF [~ [3<=KdStarPg]] & ~ [EF [[2<=AktStar & 2<=KdStarPgStarP2]]]]
normalized: [~ [E [true U [2<=AktStar & 2<=KdStarPgStarP2]]] & E [true U ~ [3<=KdStarPg]]]

abstracting: (3<=KdStarPg) states: 1,170,290 (6)
abstracting: (2<=KdStarPgStarP2) states: 433,155 (5)
abstracting: (2<=AktStar) states: 27,444,286 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.691sec

checking: AG [E [PtP2<=PtP2 U 1<=KdStarGStarP3kStarP2]]
normalized: ~ [E [true U ~ [E [PtP2<=PtP2 U 1<=KdStarGStarP3kStarP2]]]]

abstracting: (1<=KdStarGStarP3kStarP2) states: 4,240,836 (6)
abstracting: (PtP2<=PtP2) states: 42,734,935 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.037sec

checking: ~ [[~ [EF [3<=KdStarGStarPgStarP2]] & E [PtP3P2<=AktStar U 2<=KdStarGStarP3kStarP2]]]
normalized: ~ [[E [PtP3P2<=AktStar U 2<=KdStarGStarP3kStarP2] & ~ [E [true U 3<=KdStarGStarPgStarP2]]]]

abstracting: (3<=KdStarGStarPgStarP2) states: 15,826 (4)
abstracting: (2<=KdStarGStarP3kStarP2) states: 314,760 (5)
abstracting: (PtP3P2<=AktStar) states: 42,105,035 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.086sec

checking: AG [EF [[P3k<=DAG & KdStarPgStar<=KdStarGStar]]]
normalized: ~ [E [true U ~ [E [true U [P3k<=DAG & KdStarPgStar<=KdStarGStar]]]]]

abstracting: (KdStarPgStar<=KdStarGStar) states: 28,956,633 (7)
abstracting: (P3k<=DAG) states: 1,114,608 (6)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.500sec

checking: E [~ [[3<=KdStarGStarPgStarP2 & GP3<=P3k]] U ~ [~ [3<=KdStarGStarP3kStarP2]]]
normalized: E [~ [[3<=KdStarGStarPgStarP2 & GP3<=P3k]] U 3<=KdStarGStarP3kStarP2]

abstracting: (3<=KdStarGStarP3kStarP2) states: 16,257 (4)
abstracting: (GP3<=P3k) states: 42,734,935 (7)
abstracting: (3<=KdStarGStarPgStarP2) states: 15,826 (4)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.561sec

checking: [E [KdStarPgStar<=KdStarGStarPgStar U Enz<=KdStarGStarPgStarP3] & 1<=Pten]
normalized: [1<=Pten & E [KdStarPgStar<=KdStarGStarPgStar U Enz<=KdStarGStarPgStarP3]]

abstracting: (Enz<=KdStarGStarPgStarP3) states: 11,732 (4)
abstracting: (KdStarPgStar<=KdStarGStarPgStar) states: 28,849,941 (7)
abstracting: (1<=Pten) states: 42,690,563 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.278sec

checking: EF [[AX [KdStarGStarP3kStarP3<=AktStar] & [2<=KdStarGStarP3 & KdStar<=KdStarGStarP3kStarP3]]]
normalized: E [true U [~ [EX [~ [KdStarGStarP3kStarP3<=AktStar]]] & [2<=KdStarGStarP3 & KdStar<=KdStarGStarP3kStarP3]]]

abstracting: (KdStar<=KdStarGStarP3kStarP3) states: 26,087,084 (7)
abstracting: (2<=KdStarGStarP3) states: 314,760 (5)
abstracting: (KdStarGStarP3kStarP3<=AktStar) states: 41,927,790 (7)
.-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 1.533sec

checking: [E [~ [2<=KdStarPg] U KdStarGStarP3kStarP2<=KdStarGStarP3kP3] & E [~ [Pip2<=AktP3] U 3<=AktStar]]
normalized: [E [~ [Pip2<=AktP3] U 3<=AktStar] & E [~ [2<=KdStarPg] U KdStarGStarP3kStarP2<=KdStarGStarP3kP3]]

abstracting: (KdStarGStarP3kStarP2<=KdStarGStarP3kP3) states: 38,793,091 (7)
abstracting: (2<=KdStarPg) states: 5,349,501 (6)
abstracting: (3<=AktStar) states: 19,817,822 (7)
abstracting: (Pip2<=AktP3) states: 31,613,390 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.682sec

checking: [2<=KdStarGStarP3kStarP3P2 | [[KdStarGStarP3k<=KdStarGStarP3kP3 & EF [Akt<=GStarP3]] | AG [~ [1<=Pg]]]]
normalized: [2<=KdStarGStarP3kStarP3P2 | [~ [E [true U 1<=Pg]] | [KdStarGStarP3k<=KdStarGStarP3kP3 & E [true U Akt<=GStarP3]]]]

abstracting: (Akt<=GStarP3) states: 9,397,523 (6)
abstracting: (KdStarGStarP3k<=KdStarGStarP3kP3) states: 30,915,027 (7)
abstracting: (1<=Pg) states: 39,776,484 (7)
abstracting: (2<=KdStarGStarP3kStarP3P2) states: 11,811 (4)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 3.588sec

checking: ~ [EF [[[KdStarGStarPgStarP3P2<=KdStarGStarP3kStar | DAGE<=KdStarGStarP3kStar] & [Gab1<=KdStarGStar & Pip2<=GStarP3kP3]]]]
normalized: ~ [E [true U [[Gab1<=KdStarGStar & Pip2<=GStarP3kP3] & [KdStarGStarPgStarP3P2<=KdStarGStarP3kStar | DAGE<=KdStarGStarP3kStar]]]]

abstracting: (DAGE<=KdStarGStarP3kStar) states: 32,542,208 (7)
abstracting: (KdStarGStarPgStarP3P2<=KdStarGStarP3kStar) states: 41,884,847 (7)
abstracting: (Pip2<=GStarP3kP3) states: 31,142,296 (7)
abstracting: (Gab1<=KdStarGStar) states: 21,950,114 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 2.453sec

checking: E [[3<=GStarP3 | AktStar<=GStarPgP3] U [[KdStarGStarPgStarP3P2<=P3k | PtP3<=KdStarGStarP3kStar] & [KdStarGStarPgP3<=Pg & 2<=KdStarGStarP3]]]
normalized: E [[3<=GStarP3 | AktStar<=GStarPgP3] U [[KdStarGStarPgStarP3P2<=P3k | PtP3<=KdStarGStarP3kStar] & [KdStarGStarPgP3<=Pg & 2<=KdStarGStarP3]]]

abstracting: (2<=KdStarGStarP3) states: 314,760 (5)
abstracting: (KdStarGStarPgP3<=Pg) states: 42,197,431 (7)
abstracting: (PtP3<=KdStarGStarP3kStar) states: 32,545,112 (7)
abstracting: (KdStarGStarPgStarP3P2<=P3k) states: 42,734,935 (7)
abstracting: (AktStar<=GStarPgP3) states: 9,217,782 (6)
abstracting: (3<=GStarP3) states: 115,195 (5)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 3.333sec


Total processing time: 0m38.444sec


BK_STOP 1463590792821

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec

1096 1888 3952 10799 10915
iterations count:5829 (91), effective:437 (6)

initing FirstDep: 0m 0.000sec

6563 10364 12149 12522
iterations count:4753 (74), effective:351 (5)
12759
iterations count:1061 (16), effective:71 (1)
12759
iterations count:1061 (16), effective:71 (1)

iterations count:64 (1), effective:0 (0)
12759
iterations count:1061 (16), effective:71 (1)
12914
iterations count:1340 (20), effective:95 (1)
2499 3090 4870 7850 10124 11372 11135 12480
iterations count:8609 (134), effective:670 (10)

iterations count:82 (1), effective:3 (0)
6108 14542 16730 15923
iterations count:4873 (76), effective:375 (5)
12727
iterations count:1167 (18), effective:78 (1)
4631 7801 8059 11246
iterations count:4785 (74), effective:390 (6)
3479 10699 14021 13626
iterations count:4678 (73), effective:361 (5)
11082 15389 14563
iterations count:3204 (50), effective:233 (3)
7477 8284 10683 13214 14011 14235 13689 13465
iterations count:8664 (135), effective:690 (10)
4343 6286 8094 11267
iterations count:4871 (76), effective:394 (6)
6579 9662 12455 13828
iterations count:4786 (74), effective:364 (5)
3705 5019 5540 9009 10411
iterations count:5523 (86), effective:430 (6)
7852 12938 12841
iterations count:3528 (55), effective:272 (4)

iterations count:512 (8), effective:44 (0)
16703
iterations count:1910 (29), effective:139 (2)
12061 13113
iterations count:2051 (32), effective:158 (2)

iterations count:561 (8), effective:31 (0)
11987 11813 11835
iterations count:3360 (52), effective:271 (4)
14683 19211 17861
iterations count:3792 (59), effective:284 (4)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-05"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-05.tgz
mv Angiogenesis-PT-05 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool marcie"
echo " Input is Angiogenesis-PT-05, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r005kn-ebro-146347672600021"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;